View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_39 (Length: 301)
Name: NF11090_low_39
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 35542311 - 35542590
Alignment:
| Q |
1 |
aaaggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatacta |
100 |
Q |
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| T |
35542311 |
aaaggattacgacatatttaaaaatccagttaatccaaatacaactaccggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatacta |
35542410 |
T |
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| Q |
101 |
cagaatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaattca |
200 |
Q |
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| T |
35542411 |
cagaatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaattca |
35542510 |
T |
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| Q |
201 |
aaccacgtgatgcgaaaagtttcaatttgacacgcgcacctttgaggaacactgtggttgtatttccgtatggttggact |
280 |
Q |
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| T |
35542511 |
aaccacttgatgcgaaaagtttcaatttgacacgcgcacctttgaggaacaccgtggttgtatttccgtatggttggact |
35542590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 35509619 - 35509898
Alignment:
| Q |
4 |
ggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatactacag |
103 |
Q |
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| T |
35509619 |
ggattatgacatatttaaaaatccagtgaatccaaacacaactaccggcaatggtgtttacacgttccagttgaatgaggttgttgatgtgatactacaa |
35509718 |
T |
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| Q |
104 |
aatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaattcaaac |
203 |
Q |
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| T |
35509719 |
aatgcaaaccagttaaatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggtgaagggagatttagac |
35509818 |
T |
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| Q |
204 |
cacg---tgatgcgaaaagtttcaatttgacacgcgcacctttgaggaacactgtggttgtatttccgtatggttggact |
280 |
Q |
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| T |
35509819 |
caggagttgatgagagaagtttcaatttgacacgtgcacctttgaggaacactgcagttatatttccatatggttggact |
35509898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 35527816 - 35528095
Alignment:
| Q |
4 |
ggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatactacag |
103 |
Q |
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| T |
35527816 |
ggatttcgatatatttaaaactccggttaatccaagtacaataaccggtaacggtgtttacacgtttcagttgaatgaggttgttgatgtgatactacaa |
35527915 |
T |
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| Q |
104 |
aatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaattcaaac |
203 |
Q |
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| T |
35527916 |
aatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggtgaagggaaatttgaac |
35528015 |
T |
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| Q |
204 |
cacgtg---atgcgaaaagtttcaatttgacacgcgcacctttgaggaacactgtggttgtatttccgtatggttggact |
280 |
Q |
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|| ||| || ||||||||| ||||| ||||| || |||||||||||||||| ||| |||||||||||||||||||| |
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| T |
35528016 |
caggtgttcatcagaaaagtttgaatttaacacgtgcgcctttgaggaacactgcagttatatttccgtatggttggact |
35528095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 35953808 - 35953845
Alignment:
| Q |
166 |
tttttgggttttgggatatggagaagggaaattcaaac |
203 |
Q |
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| T |
35953808 |
tttttgggttttgggatatggagaaaggaaattcaaac |
35953845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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