View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_41 (Length: 288)
Name: NF11090_low_41
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 22364791 - 22365061
Alignment:
| Q |
1 |
tatatttagaaagaattcagaataaaatattgcacaaagaagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaa |
100 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364791 |
tatatttaaaaagaattcaaaataaaatattgcacaaagaagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaa |
22364890 |
T |
|
| Q |
101 |
cttctaaaactgaaaatatcatggtttggtcataaaaaatgtgatatttgaactatgtccaaaaatgtcgttgnnnnnnntataaagggatggaaaatat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22364891 |
cttccaaaactgaaaatatcatggtttggtcataaaaaatgtgatatttgaactatgtccaaaaatgtcgttgaaaaaaatataaagggatggaaaatat |
22364990 |
T |
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| Q |
201 |
gaacacaatgatatctaaaccaaagggcnnnnnnnctttgataatgtcaatggtcaagaaaatagtttgat |
271 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22364991 |
gaacacaatgatatctaaaccaaagggcaaaaaaactttgataatgtcaatggtcaagaaaatagtttgat |
22365061 |
T |
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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 2788262 - 2788391
Alignment:
| Q |
142 |
tgatatttgaactatgtccaaaaatgtcgttgnnnnnnntataaagggatggaaaatatgaacacaatgatatctaaaccaaagggcnnnnnnnctttga |
241 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2788262 |
tgatatttgaactatgtccaaaaatgttgttgaaaaaaatataaagggatgaaaaatatgaacacaatgatatctaaaccaaagggcaaaagaactttga |
2788361 |
T |
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| Q |
242 |
taatgtcaatggtcaagaaaatagtttgat |
271 |
Q |
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| T |
2788362 |
taatgtcaatggccaagaaaatagtttgat |
2788391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 9368793 - 9368765
Alignment:
| Q |
243 |
aatgtcaatggtcaagaaaatagtttgat |
271 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9368793 |
aatgtcaatggtcaagaaaatagtttgat |
9368765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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