View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_42 (Length: 286)
Name: NF11090_low_42
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 13601668 - 13601915
Alignment:
| Q |
17 |
attttgaagtcaaagaggaagagataaaggaaggaagggaaaactctattggaatatgcaaagttgtggaagcatacttgctggagaatccacaagtcta |
116 |
Q |
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| T |
13601668 |
attttgaagtcaaagaggaagagataaaggaaggaagggaaaactctattggaatatgcaaagttgtggaagcatacttgctggagaatccacaagtcta |
13601767 |
T |
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| Q |
117 |
tgtttagtttattcttattcannnnnnnngacaaatatatacagtcatcttattaaaagatgaaatacaaatttatttaatttttgaaatattagtgtga |
216 |
Q |
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| T |
13601768 |
tgtttagtttattcttattcattttttttgacaaatatatacagtcatcttattaaaagatgaaatacaaatttatttaatttttgaaatattagtgtga |
13601867 |
T |
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| Q |
217 |
agagtccacccaaacattgggacactttgaatttgtaagtgttgaagt |
264 |
Q |
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| T |
13601868 |
agagtccacccaaacattgggacactttgaatttgtaagtgttgaagt |
13601915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 50000200 - 50000099
Alignment:
| Q |
17 |
attttgaagtcaaagaggaagagataaaggaaggaagggaaaactctattggaatatgcaaagttgtggaagcatacttgctggagaatccacaagtcta |
116 |
Q |
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||||||| || ||||| ||||| |||||||||||||||||| | | |||||||| | | |||||||||| |||| |||||||||||||||||||||| |
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| T |
50000200 |
attttgatgttaaagaagaagatgtaaaggaaggaagggaaagcaccattggaatttacgaagttgtggagtcatatctgctggagaatccacaagtcta |
50000101 |
T |
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| Q |
117 |
tg |
118 |
Q |
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|| |
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| T |
50000100 |
tg |
50000099 |
T |
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