View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_43 (Length: 283)
Name: NF11090_low_43
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27109956 - 27109751
Alignment:
| Q |
14 |
agatggcagtggggagtatggttgttgaggatccaaatcccgctcccgatggtaaaccaaactttgtatcgaagtttgcattaaaacacaaagaaacaat |
113 |
Q |
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| T |
27109956 |
agatggcagtggggagtatggttgttgaggatccaaatcccgttcccgatggtaaaccaaactttgtatcaaagtttgcattaagacacaaagaaacaat |
27109857 |
T |
|
| Q |
114 |
tagtctctatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27109856 |
tagtctcgatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
27109757 |
T |
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| Q |
214 |
agaaca |
219 |
Q |
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|||||| |
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| T |
27109756 |
agaaca |
27109751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27151753 - 27151548
Alignment:
| Q |
14 |
agatggcagtggggagtatggttgttgaggatccaaatcccgctcccgatggtaaaccaaactttgtatcgaagtttgcattaaaacacaaagaaacaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
27151753 |
agatggcagtggggagtatggttgttgaggatccaaatcccgttcccgatggtaaaccaaactttgtatcaaagtttgcattaagacacaaagaaacaat |
27151654 |
T |
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| Q |
114 |
tagtctctatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27151653 |
tagtctcgatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
27151554 |
T |
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| Q |
214 |
agaaca |
219 |
Q |
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|||||| |
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| T |
27151553 |
agaaca |
27151548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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