View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_45 (Length: 262)
Name: NF11090_low_45
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 51115692 - 51115445
Alignment:
| Q |
1 |
ctgacaagtatggatatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgt |
100 |
Q |
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| T |
51115692 |
ctgacaagtatgggtatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgt |
51115593 |
T |
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| Q |
101 |
tcctgataatgaaggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgattcacatcgagggcgt |
200 |
Q |
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| T |
51115592 |
tcctgataatgaaggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgattcacatcgagggcat |
51115493 |
T |
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| Q |
201 |
caggataaagaaggttggactcctctccatatggctgctatgaaaggt |
248 |
Q |
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| T |
51115492 |
caggataaagaaggttggactcctctccatatggctgctatgaaaggt |
51115445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 51106356 - 51106109
Alignment:
| Q |
1 |
ctgacaagtatggatatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgt |
100 |
Q |
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| T |
51106356 |
ctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgt |
51106257 |
T |
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| Q |
101 |
tcctgataatgaaggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgattcacatcgagggcgt |
200 |
Q |
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| T |
51106256 |
tcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatcgggggcgt |
51106157 |
T |
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| Q |
201 |
caggataaagaaggttggactcctctccatatggctgctatgaaaggt |
248 |
Q |
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| T |
51106156 |
attgataaagaaggcttcactgctctccattgggctgctattaaaggt |
51106109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 48034105 - 48034221
Alignment:
| Q |
18 |
cagacaacacatgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgttcctgataatgaaggaa |
117 |
Q |
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|||| |||||||||||| |||||||||||||| || |||||||||||| || || ||||||||||||| ||||| ||||||| ||||||||| || |||| |
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| T |
48034105 |
cagataacacatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaa |
48034204 |
T |
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| Q |
118 |
gaagccccttgcattgg |
134 |
Q |
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| T |
48034205 |
gatgccccttgcattgg |
48034221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 48035932 - 48036010
Alignment:
| Q |
133 |
gggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgattcacatcgagggcgtcaggataaaga |
211 |
Q |
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| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatgcacatcgggggcgtccggataaaga |
48036010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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