View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_50 (Length: 256)
Name: NF11090_low_50
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 30503844 - 30503610
Alignment:
| Q |
6 |
agaagcaaaggaaacgtccaccacaacaacaaccacaacagcttcagcttcagcagcaacaaccaatgcaattgcaattgcctcttcatcttcatcatca |
105 |
Q |
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| T |
30503844 |
agaagaaaaggaaacgtccaccacaacaacaaccacaacagcttcagcttcagcagcaacaaccaatgcaattgcaattgcctcttcatcttcatcatca |
30503745 |
T |
|
| Q |
106 |
ccatcaacatcagcttccacctccaggtgcaactcaataaaatggctattctcatattccatggaaaaaactatctttatttatctcaagtcatgaatat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503744 |
ccatcaacatcagcttccacctccaggtgcaactcaataaaatggctattctcatattccatggaaaaaactatctttatttatctcaagtcatgaatat |
30503645 |
T |
|
| Q |
206 |
tattaattgtctaattaattttaagtactagtagt |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30503644 |
tattaattgtctaattaattttaagtactagtagt |
30503610 |
T |
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