View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_55 (Length: 249)
Name: NF11090_low_55
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 37719803 - 37719568
Alignment:
| Q |
12 |
agagaatattaagacaacatattaggagattatgannnnnnnnnnnnnnaaatataggaaattgtgacttgtagagctagaaatctatggaattcaaatg |
111 |
Q |
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| T |
37719803 |
agagaatattaagacaacatattaggagattatgattttttttttttt-aaatataggaaattgtgacttgtagagctagaaatctatggaattcaaatg |
37719705 |
T |
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| Q |
112 |
cgaaattctcatgcacacacctcgcttttgttcgtccaggctcatcctagttataaatgaaagtgttattcaaagnnnnnnngtattcttcataaaattg |
211 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37719704 |
cgaaattcccatgcacacacctcgcttttgttcgtccaggctcatcctagttataaatgaaagtgttattcaaag-aaaaaagtattcttcataaaattg |
37719606 |
T |
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| Q |
212 |
aagctatcatcacattgattttattataaaattatgtt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37719605 |
aagctatcatcacattgattttattataaaattatgtt |
37719568 |
T |
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