View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_64 (Length: 233)
Name: NF11090_low_64
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_64 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 13602230 - 13602026
Alignment:
| Q |
29 |
ccaaacactcaattttatttttgttattnnnnnnngaaagaaaatgatacggagcactactatttcatggttttcgtagaaattccttcgtgagatatag |
128 |
Q |
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| T |
13602230 |
ccaaacactcaattttatttttgttattaaaaaaagaaagaaactgatacggagcactactatttcatggttttcgtagaaatcccttcgtgagatatag |
13602131 |
T |
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| Q |
129 |
cattactcattcacaaaaacattacatactacaattatgattatatattattgttatgttgtgtaatatattctaaaatgtgacattagagtttttcatt |
228 |
Q |
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| T |
13602130 |
cattactcattcacgaaaacattacatgctacaattatgattatatattattgttatgatgtgtaatatattctaaaatgtgacattagagtttttcatt |
13602031 |
T |
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| Q |
229 |
tgttt |
233 |
Q |
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||||| |
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| T |
13602030 |
tgttt |
13602026 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 25995648 - 25995686
Alignment:
| Q |
101 |
ttcgtagaaattccttcgtgagatatagcattactcatt |
139 |
Q |
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| T |
25995648 |
ttcgtagaaatcccttcgtgagatatagcattactcatt |
25995686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 34753677 - 34753613
Alignment:
| Q |
73 |
tgatacggagcactactatttcatggttttcgtagaaat--tccttcgtgagatatagcattact |
135 |
Q |
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| T |
34753677 |
tgatacggtgcactgctatgtcgtggttttcgtagaaatcccccttcgtgggatatagcattact |
34753613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 11139478 - 11139446
Alignment:
| Q |
101 |
ttcgtagaaattccttcgtgagatatagcatta |
133 |
Q |
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| T |
11139478 |
ttcgtagaaattccttcgtgggatatagcatta |
11139446 |
T |
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