View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_65 (Length: 232)
Name: NF11090_low_65
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 3302932 - 3303137
Alignment:
| Q |
17 |
aattgttcggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactc |
116 |
Q |
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| T |
3302932 |
aattgttcggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactc |
3303031 |
T |
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| Q |
117 |
ggtaggagttaaaattattggtaacaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3303032 |
ggtaggagttaaaattattggtaacaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttct |
3303131 |
T |
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| Q |
217 |
gctgct |
222 |
Q |
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| |||| |
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| T |
3303132 |
gttgct |
3303137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 3291074 - 3291197
Alignment:
| Q |
25 |
ggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggag |
124 |
Q |
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||||||||| |||| ||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| ||||| | |||| |||| |
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| T |
3291074 |
ggttgattccacattatattcagaattttgcacaaagcaaagccgaacgctgggctttggttaccatctcatttgcctgagttgtgtgaggcggttggag |
3291173 |
T |
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| Q |
125 |
ttaaaattattggtaacaagcaaa |
148 |
Q |
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|| ||||||||||| ||||||||| |
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| T |
3291174 |
ttgaaattattggtgacaagcaaa |
3291197 |
T |
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