View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_67 (Length: 220)
Name: NF11090_low_67
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 32138572 - 32138762
Alignment:
| Q |
12 |
agcagaacctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
111 |
Q |
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| T |
32138572 |
agcagaagctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatccgagtcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
32138671 |
T |
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| Q |
112 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattt |
202 |
Q |
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| T |
32138672 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattt |
32138762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 32147970 - 32148149
Alignment:
| Q |
20 |
ctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaac |
119 |
Q |
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| T |
32147970 |
ctgtgctaaagggattgatcaaaagcggtgtgtatgtgagtgacttagaatcaaaaacgacgttggggagaaaaccgtaaggtccatccccgaataaaac |
32148069 |
T |
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| Q |
120 |
aactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagcta |
199 |
Q |
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| T |
32148070 |
aactccctttgaagaggaaagacaaatagcgaattttttagcgaagctaaaagccgaagctaattgagatggaagagcta |
32148149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 32126906 - 32126979
Alignment:
| Q |
129 |
tgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattt |
202 |
Q |
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|||||| |||| ||||| ||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||| |
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| T |
32126906 |
tgaagaagaaaaacaaaaagcaaattttcttttgaaaataaaagcagaagctagttgagatggaagagcgattt |
32126979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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