View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_68 (Length: 219)
Name: NF11090_low_68
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 4581189 - 4581375
Alignment:
| Q |
19 |
aattggatttgaaaatggcgccagtatcagcattagcaaagtacaaactggtattcttgggtgaccaatctgttggtaaaaccagcatcatcactcgctt |
118 |
Q |
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| T |
4581189 |
aattggatttgaaaatggcgccagtatcagcattagcaaagtacaaactggtatttttgggtgaccaatctgttggtaaaaccagcatcatcactcgctt |
4581288 |
T |
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| Q |
119 |
catgtatgataaatttgataacacctatcaggtacccttctcaaattcaatcaaaaattcactttaaattcttcaatattcattcat |
205 |
Q |
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| T |
4581289 |
catgtacgataaatttgataacacctatcaggtacccttctcagattcaatcaaaaattcactttcaattcttcaatattcattcat |
4581375 |
T |
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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 40880871 - 40880748
Alignment:
| Q |
31 |
aaatggcgccagtatcagcattagcaaagtacaaactggtattcttgggtgaccaatctgttggtaaaaccagcatcatcactcgcttcatgtatgataa |
130 |
Q |
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| T |
40880871 |
aaatggcgccagtttcagctctcgcgaagtacaaattggttttcctcggcgatcaatccgtcggtaaaaccagcatcatcactcgctttatgtacgacaa |
40880772 |
T |
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| Q |
131 |
atttgataacacctatcaggtacc |
154 |
Q |
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| T |
40880771 |
attcgataacacttatcaggtacc |
40880748 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 39530043 - 39529952
Alignment:
| Q |
60 |
tacaaactggtattcttgggtgaccaatctgttggtaaaaccagcatcatcactcgcttcatgtatgataaatttgataacacctatcaggt |
151 |
Q |
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| T |
39530043 |
tacaaactcgttttcttaggtgatcaatccgttggtaaaactagcatcatcactcgctttatgtatgataaattcgacactacctatcaggt |
39529952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 37854224 - 37854157
Alignment:
| Q |
84 |
caatctgttggtaaaaccagcatcatcactcgcttcatgtatgataaatttgataacacctatcaggt |
151 |
Q |
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| T |
37854224 |
caatccgttggcaaaaccagtatcatcacccgcttcatgtacgacaaatttgacaccacctatcaggt |
37854157 |
T |
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