View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_8 (Length: 478)
Name: NF11090_low_8
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 42732373 - 42732831
Alignment:
| Q |
10 |
gcagagaatggtaatggaattaagtaaactgcacgtgtcactgttgaattgatctagacgtaccaacactatacattaagggctgagacccaatagaaca |
109 |
Q |
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| T |
42732373 |
gcagagaatggtgatggaattaagtaaactgcacgtgtcactgttgaattgatctagacgtaccaacactatacattaagggctgagacccaatagaaca |
42732472 |
T |
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| Q |
110 |
gtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataacctattactataagctctgactcattgtccttctctatagggaa |
209 |
Q |
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| T |
42732473 |
gtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataatctattactataagctctgactcattgtccttctctatagggaa |
42732572 |
T |
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| Q |
210 |
tgcttatattgttgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaatatttatggaacatagttgtatatagtatatac |
309 |
Q |
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| T |
42732573 |
tgcttatattattgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaatatttatggaacatagttgtatatagtatatac |
42732672 |
T |
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| Q |
310 |
aacaacaagccttccacaacgagagagaaagtgacttgtgaaggttgattattggtttcctttctctgtagtgatagtgaaatgactcggttgatcttaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42732673 |
aacaacaagccttccacaacgagagagaaagtgacttgtgaaggttgattattggtttcctttctctgtagtgatagtgaaatgactcggttgatcttaa |
42732772 |
T |
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| Q |
410 |
ctgcatgacttgat--------tagatatatgcatgtgcaaacttttatgggagcttat |
460 |
Q |
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| T |
42732773 |
ctgcatgacttgattagatagatagatatatgcatgtgcaaacttttatgggagcttat |
42732831 |
T |
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