View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_9 (Length: 466)
Name: NF11090_low_9
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 31102751 - 31102881
Alignment:
| Q |
18 |
aattaactcacatgatctactacaatttaaatgccaaagtgtaagggagagaaacaacatgaatcttgaactatatatgccaacatgaaatccaaattta |
117 |
Q |
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| T |
31102751 |
aattaactcacatgatctactacaatttaaatgccaaagtgtaagggagagaaacaacatgaatcttgaactatatatgccaacatgaaatccaaattta |
31102850 |
T |
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| Q |
118 |
tagttgatactcctaaaattcaatacaagca |
148 |
Q |
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| T |
31102851 |
tagttgatactcctaaaattcaatacaagca |
31102881 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 31036425 - 31036521
Alignment:
| Q |
297 |
acttccagtctcataataatgatatcatgaagcattttctttaacagttttagcattattttgagatgtaataataagcttattaacatcatttcaa |
393 |
Q |
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| T |
31036425 |
acttcgagtatcataataatgatatcatgaagcattttctttaagagttgtagcattatttttagatggaataacaagcttattaacatcatttcaa |
31036521 |
T |
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