View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_high_1 (Length: 683)
Name: NF11091_high_1
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 80 - 301
Target Start/End: Complemental strand, 32319498 - 32319275
Alignment:
| Q |
80 |
agttttgtgctaggagagccattgttgttttctgtattaaggaagaatggaaataataatagttacaataaatcattttaatcatcactactagaagata |
179 |
Q |
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| T |
32319498 |
agttctgtgctaggagtgccattgttgttttctgtatcaaggaaaaattgaaacaatgattgttacaatcaataatttaaatcatcactactagaaaaga |
32319399 |
T |
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| Q |
180 |
tttaattatcgataaaatttatagacaaaacaaatgaatttgatctccaattttgagttttccaactgt--gagaaagaattagagataagtttcatgtt |
277 |
Q |
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| T |
32319398 |
tttaattatcgataaaatttatagacgaaacaaatgaatttgatctccaattttgagttttcaaactgttagagaaagaattagagacaaatttcatgtt |
32319299 |
T |
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| Q |
278 |
ccatgaattcagatttttatctat |
301 |
Q |
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| T |
32319298 |
ccatgaatttagatttttatctat |
32319275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 32366190 - 32366036
Alignment:
| Q |
151 |
atcattttaatcatcactactagaagatatttaattatcgataaaatttatagacaaaacaaatgaatttgatctccaattttgagttttccaactgtga |
250 |
Q |
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| T |
32366190 |
atcatttcaatcatcattactagaaaatatttaattatcgataaaatttatagacaaaacaaatgaatttgatctccaattttgagttttcaaattgtga |
32366091 |
T |
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| Q |
251 |
gaaagaattagagataagtttcatgttccatgaattcagatttttatctataata |
305 |
Q |
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| T |
32366090 |
gaaagaattagagacaagtttcatgttccatgaattttggtttttatctataata |
32366036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 32366414 - 32366261
Alignment:
| Q |
17 |
agtacttgaggagtgatcctcggttctgaaacatctggaatgatgtttgttgttgcattttcgagttttgtgctaggagagccattgttgttttctgtat |
116 |
Q |
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| T |
32366414 |
agtacttgaggagtgatcctcgattttggaacatctcgaatgatgtttgttgttgcactttcgagttctgtgctaggagtgacattgctgttttctgtat |
32366315 |
T |
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| Q |
117 |
taaggaagaatgg----aaataataatagttacaataaatcattttaatcatca |
166 |
Q |
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| T |
32366314 |
taaggaataatggaaaaaaataatagtacttacaaaaaatcatttcaatcatca |
32366261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 678
Target Start/End: Original strand, 32304227 - 32304290
Alignment:
| Q |
615 |
cacaaaaagagacacatgggtcgtataaagatacggttttccctttttaaatctttcttctctc |
678 |
Q |
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| T |
32304227 |
cacaagaagagacaaatggttcgtgtaaagatacggttttctcttttgaaatattttttctctc |
32304290 |
T |
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