View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_high_28 (Length: 229)

Name: NF11091_high_28
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_high_28
NF11091_high_28
[»] chr7 (11 HSPs)
chr7 (1-225)||(22901183-22901407)
chr7 (1-225)||(27761425-27761649)
chr7 (1-225)||(27756874-27757098)
chr7 (1-225)||(47419483-47419707)
chr7 (1-169)||(35705662-35705830)
chr7 (3-225)||(7939989-7940209)
chr7 (3-225)||(7944542-7944762)
chr7 (41-165)||(733632-733756)
chr7 (55-169)||(7466485-7466599)
chr7 (44-146)||(13828087-13828189)
chr7 (2-83)||(37355589-37355670)
[»] chr4 (18 HSPs)
chr4 (1-225)||(31670119-31670341)
chr4 (1-169)||(53722035-53722202)
chr4 (1-169)||(10317025-10317192)
chr4 (1-169)||(8892582-8892749)
chr4 (1-169)||(27186171-27186341)
chr4 (3-225)||(44147054-44147273)
chr4 (3-225)||(44151589-44151808)
chr4 (1-127)||(3770871-3770999)
chr4 (55-169)||(50627904-50628018)
chr4 (1-169)||(43683636-43683792)
chr4 (70-169)||(35842843-35842942)
chr4 (1-127)||(41884953-41885076)
chr4 (5-127)||(31359183-31359303)
chr4 (1-127)||(49274517-49274640)
chr4 (7-156)||(53785880-53786028)
chr4 (176-225)||(3771044-3771093)
chr4 (36-77)||(45976222-45976263)
chr4 (1-51)||(35842798-35842847)
[»] chr3 (13 HSPs)
chr3 (1-225)||(21847139-21847362)
chr3 (1-225)||(21850229-21850452)
chr3 (1-169)||(9697615-9697783)
chr3 (1-169)||(11004365-11004532)
chr3 (1-169)||(43547752-43547920)
chr3 (1-169)||(9105303-9105470)
chr3 (3-127)||(54171924-54172050)
chr3 (3-127)||(54167344-54167470)
chr3 (50-169)||(43554645-43554764)
chr3 (33-155)||(755889-756012)
chr3 (1-127)||(39399127-39399251)
chr3 (19-127)||(38175790-38175896)
chr3 (44-77)||(755824-755857)
[»] chr6 (13 HSPs)
chr6 (1-214)||(8315421-8315633)
chr6 (1-214)||(8319960-8320171)
chr6 (1-225)||(27552014-27552239)
chr6 (1-169)||(17096236-17096403)
chr6 (1-215)||(17779943-17780156)
chr6 (1-169)||(17895685-17895852)
chr6 (1-169)||(14531749-14531916)
chr6 (1-169)||(17886810-17886971)
chr6 (1-225)||(27574643-27574856)
chr6 (11-127)||(6440865-6440979)
chr6 (35-76)||(17163689-17163730)
chr6 (39-77)||(7888212-7888250)
chr6 (35-76)||(17159659-17159700)
[»] chr8 (18 HSPs)
chr8 (1-225)||(28644590-28644813)
chr8 (1-225)||(30410235-30410458)
chr8 (37-225)||(30405726-30405914)
chr8 (1-169)||(33071946-33072113)
chr8 (1-169)||(42234656-42234823)
chr8 (1-225)||(197591-197812)
chr8 (1-225)||(202109-202330)
chr8 (1-225)||(312428-312649)
chr8 (1-225)||(316946-317167)
chr8 (55-180)||(38757072-38757197)
chr8 (1-127)||(43807485-43807612)
chr8 (1-127)||(43812044-43812171)
chr8 (1-74)||(41949830-41949902)
chr8 (1-152)||(27435169-27435314)
chr8 (1-70)||(41945367-41945434)
chr8 (1-32)||(38757031-38757062)
chr8 (171-225)||(43807391-43807445)
chr8 (171-225)||(43811950-43812004)
[»] chr5 (23 HSPs)
chr5 (1-225)||(30695321-30695545)
chr5 (1-169)||(32485947-32486114)
chr5 (1-169)||(26336767-26336935)
chr5 (1-169)||(19502336-19502504)
chr5 (55-169)||(36632383-36632497)
chr5 (1-225)||(12018760-12018984)
chr5 (1-225)||(12023318-12023542)
chr5 (1-159)||(43384980-43385138)
chr5 (55-225)||(40367517-40367688)
chr5 (3-127)||(7099374-7099500)
chr5 (3-127)||(7103943-7104069)
chr5 (3-225)||(16794139-16794360)
chr5 (3-225)||(16798700-16798921)
chr5 (21-155)||(20830304-20830437)
chr5 (1-225)||(40371655-40371864)
chr5 (1-225)||(37682065-37682277)
chr5 (1-225)||(37658761-37658973)
chr5 (21-96)||(20808675-20808749)
chr5 (1-127)||(10274574-10274698)
chr5 (1-83)||(10277232-10277313)
chr5 (175-225)||(7099280-7099329)
chr5 (175-225)||(7103849-7103898)
chr5 (98-130)||(5733082-5733114)
[»] chr2 (10 HSPs)
chr2 (1-225)||(8055420-8055643)
chr2 (1-225)||(8050867-8051090)
chr2 (1-169)||(12999426-12999593)
chr2 (1-223)||(6463345-6463555)
chr2 (3-225)||(36670534-36670755)
chr2 (3-225)||(36675082-36675303)
chr2 (55-136)||(13270980-13271061)
chr2 (1-127)||(35950443-35950567)
chr2 (39-127)||(34590280-34590366)
chr2 (1-127)||(41093852-41093976)
[»] chr1 (9 HSPs)
chr1 (1-214)||(39793859-39794070)
chr1 (1-225)||(16588383-16588607)
chr1 (55-225)||(26311591-26311760)
chr1 (55-225)||(26316082-26316251)
chr1 (1-169)||(43591783-43591950)
chr1 (1-127)||(10504464-10504588)
chr1 (1-32)||(26311550-26311581)
chr1 (1-32)||(26316041-26316072)
chr1 (98-130)||(41879945-41879977)
[»] scaffold0044 (2 HSPs)
scaffold0044 (1-225)||(44771-44993)
scaffold0044 (1-225)||(49351-49573)
[»] scaffold0440 (2 HSPs)
scaffold0440 (1-127)||(3009-3137)
scaffold0440 (1-225)||(7535-7757)
[»] scaffold0006 (1 HSPs)
scaffold0006 (7-76)||(60201-60270)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 22901183 - 22901407
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901183 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 22901282  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901283 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 22901382  T
Q  201 tttcatcataactttcttctctctc 225  Q
     ||||||||||||||||||||||||    
T  22901383 attcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27761425 - 27761649
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27761425 ttagtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagatctagagtt 27761523  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||    
T  27761524 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatca-tttaca 27761622  T
Q  200 a-tttcatcataactttcttctctctc 225  Q
    | |||||||||||||||||||||||||    
T  27761623 attttcatcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27756874 - 27757098
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27756874 ttagtgataatcacaatcagtggttaatcgcat-tctgttttagtttgttatgaagtttgttacaagtttgttagaggtttgtagataagatctagagtt 27756972  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||    
T  27756973 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatca-tttaca 27757071  T
Q  200 a-tttcatcataactttcttctctctc 225  Q
    | |||||||||||||||||||||||||    
T  27757072 attttcatcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 47419707 - 47419483
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  47419707 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttcttagaggttagcagataatatctagagtt 47419609  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-gtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||    
T  47419608 tgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtagaatcaataaaaatca-attaca 47419510  T
Q  200 atttcatcataacttt-cttctctctc 225  Q
    |||||||||||| ||| ||||||||||    
T  47419509 atttcatcataattttacttctctctc 47419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 35705662 - 35705830
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtt-atgaagtttgttacaagtttgttagaggttagcagataagatctagagt 99  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  35705662 ttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgtttatggagtttgttacaagtttgttagaggttagcaaataagatctagagt 35705760  T
Q  100 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-tcctttgtatatttt 169  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  35705761 ttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacctttctttgtatatttt 35705830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 7940209 - 7939989
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  7940209 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 7940110  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    ||||||||||||||||||||| |||||||    
T  7940109 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatca-tttacaa 7940014  T
Q  201 tttcatcataactttcttctctctc 225  Q
     ||||||||||||||||||||||||    
T  7940013 attcatcataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 7944762 - 7944542
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  7944762 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 7944663  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    ||||||||||||||||||||| |||||||    
T  7944662 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatca-tttacaa 7944567  T
Q  201 tttcatcataactttcttctctctc 225  Q
     ||||||||||||||||||||||||    
T  7944566 attcatcataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 733756 - 733632
Alignment:
Q  41 ttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacatt 140  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  733756 ttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacatt 733657  T
Q  141 gtatataagctacctcctttgtata 165  Q
    |||||||||||||||||||||||||    
T  733656 gtatataagctacctcctttgtata 733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 7466599 - 7466485
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7466599 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacc 7466500  T
Q  155 tcctttgtatatttt 169  Q
    |||||||||||||||    
T  7466499 tcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 13828189 - 13828087
Alignment:
Q  44 gtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgta 143  Q
    ||||||| ||||||||||||||||||||||||||  || |  |||| |  ||| || |||||||||||||||||||||||| || || ||||| | ||||    
T  13828189 gtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgta 13828090  T
Q  144 tat 146  Q
    |||    
T  13828089 tat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 37355589 - 37355670
Alignment:
Q  2 tagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 83  Q
    |||||||||||||| | |||||||||||| |   ||| ||||||||||||||||  ||||||||||||| |||||| |||||    
T  37355589 tagtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagc 37355670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31670119 - 31670341
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31670119 ttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 31670217  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  31670218 tgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgaatgtagaatcaataaagatca-tttacaa 31670316  T
Q  201 tttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||    
T  31670317 tttcatcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 53722035 - 53722202
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53722035 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggctagcagataagatctagagtt 53722133  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  53722134 tgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 10317192 - 10317025
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||| |||||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10317192 ttagttataatcacaatcagtgattaatcacac-tttgttgtagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtt 10317094  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10317093 tgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8892749 - 8892582
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |||||||    
T  8892749 ttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataagatatagagtt 8892651  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8892650 tgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 27186171 - 27186341
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtt-tgttttagttt-gttatgaagtttgttacaagtttgttagaggttagcagataagatctagag 98  Q
    ||||||||||||||||| |||| |||||||||  || | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27186171 ttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagag 27186270  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  27186271 tttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 44147054 - 44147273
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  44147054 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 44147153  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || ||||||||||||||||||| |||||||    
T  44147154 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagtagaatcaataaagatca-tttacaa 44147248  T
Q  201 tttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||    
T  44147249 tttcatcataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 44151589 - 44151808
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  44151589 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 44151688  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || ||||||||||||||||||| |||||||    
T  44151689 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagtagaatcaataaagatca-tttacaa 44151783  T
Q  201 tttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||    
T  44151784 tttcatcataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 3770871 - 3770999
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  3770871 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 3770970  T
Q  99 tttgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||||    
T  3770971 tttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 50628018 - 50627904
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacc 50627919  T
Q  155 tcctttgtatatttt 169  Q
    |||||| ||||||||    
T  50627918 tcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 43683792 - 43683636
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||           |||||||||| ||||||| |||||||    
T  43683792 ttagtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgtta-----------gaggttagcaaataagatatagagtt 43683705  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43683704 tgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  70 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41884953 - 41885076
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||||| ||| |||    
T  41884953 ttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagttagttagagattagctcataagat-tagggtt 41885049  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  41885050 tgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 31359183 - 31359303
Alignment:
Q  5 tgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgtt 104  Q
    ||||||||||||| ||||||||||||||  || | || |||||| |||||| ||||||||||||| ||||||| |||||  ||||| | ||| |||||||    
T  31359183 tgataatcacaattagtggttaatcacat-ttagattcagtttgctatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgtt 31359280  T
Q  105 acattgcttgtgcttcaagcaac 127  Q
    || | |||||| |||||||||||    
T  31359281 acttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 49274640 - 49274517
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||| |||| ||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| |||    
T  49274640 ttagtgatgatcataattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagttagttagagattagctcataaggt-tagggtt 49274544  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  49274543 tgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 53785880 - 53786028
Alignment:
Q  7 ataatcacaatcagtggttaatcacaagt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgtta 105  Q
    ||||||||| ||||||||||||||||  |  |||||| |||||||| ||| ||||||||||||||||||||   ||||  || | |  ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttat-atagttagggtttgtta 53785977  T
Q  106 cattgcttgtgcttcaagcaacttagctagacattgtatataagctacctc 156  Q
    ||| |||||||||||||||||| || ||||   | ||||||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacctc 53786028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 3771044 - 3771093
Alignment:
Q  176 agaatcaataaagatcattttacaa-tttcatcataactttcttctctctc 225  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  3771044 agaatcaataaagatca-tttacaattttcatcataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 45976263 - 45976222
Alignment:
Q  36 ttgttttagtttgttatgaagtttgttacaagtttgttagag 77  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976263 ttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35842798 - 35842847
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta 51  Q
    |||||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  35842798 ttagtgataatcacaatcagtgattaatcac-actttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21847139 - 21847362
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847139 ttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 21847237  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||    
T  21847238 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatca-tttaca 21847336  T
Q  200 atttcatcataactttcttctctctc 225  Q
    ||||||||||||||||||||||||||    
T  21847337 atttcatcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21850229 - 21850452
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850229 ttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 21850327  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||    
T  21850328 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatatagaatcaataaagatca-tttaca 21850426  T
Q  200 atttcatcataactttcttctctctc 225  Q
    ||||||||||||||||||||||||||    
T  21850427 atttcatcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9697615 - 9697783
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| |||| |||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9697615 ttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtt 9697714  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  9697715 tgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11004532 - 11004365
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||  ||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  11004532 ttagtgataatcacaatcagtgaataatcacat-tttgttttagcttgttatgaagattgttacaagtttgttagaggttagcaaataagatctagagtt 11004434  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11004433 tgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 43547752 - 43547920
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| ||||| |||  ||  ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  43547752 ttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtt 43547851  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43547852 tgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9105303 - 9105470
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||| || |||||||||  |||| |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  9105303 ttagtgataatcacaatcaatgattaatcacat-tttgctttagtttgttatgaagtatgttacaagtttgttagaggttaacaaataagatctagagtt 9105401  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  9105402 tgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 54172050 - 54171924
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  54172050 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 54171951  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||    
T  54171950 tgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 54167470 - 54167344
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataa--gatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |   |||||||    
T  54167470 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataagggtgttagagtt 54167371  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||    
T  54167370 tgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 43554645 - 43554764
Alignment:
Q  50 tatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataag 149  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || ||||||||||||||  ||||||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  150 ctacctcctttgtatatttt 169  Q
    ||||||| ||||||||||||    
T  43554745 ctacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 755889 - 756012
Alignment:
Q  33 agtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttag 131  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  || |  |||| |   ||| ||||||||||||||||||||||||||| || ||     
T  755889 agtttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaa 755988  T
Q  132 ctagacattgtatataagctacct 155  Q
    |||||   ||||||||||||||||    
T  755989 ctagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 39399251 - 39399127
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| |||    
T  39399251 ttagtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtt 39399154  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  39399153 tgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 38175896 - 38175790
Alignment:
Q  19 agtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgct 118  Q
    ||||||||||||||  || |||| ||||||||||||| ||||||||||||| ||||||| |||||  ||||||| ||| ||||||||| | |||||| ||    
T  38175896 agtggttaatcacat-ttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtact 38175799  T
Q  119 tcaagcaac 127  Q
    |||||||||    
T  38175798 tcaagcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  44 gtttgttatgaagtttgttacaagtttgttagag 77  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8315633 - 8315421
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8315633 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 8315534  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||| ||| ||     
T  8315533 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatatgtagaatcaataaagatcaattt-cat 8315435  T
Q  201 tttcatcataactt 214  Q
    ||||||||||||||    
T  8315434 tttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8320171 - 8319960
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8320171 ttagtgataatcacaatcagtggttaatcacaa-tatgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 8320073  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||| ||| ||     
T  8320072 tgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttcttatgtagaatcaataaagatcaattt-cat 8319974  T
Q  201 tttcatcataactt 214  Q
    ||||||||||||||    
T  8319973 tttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27552239 - 27552014
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||    
T  27552239 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaggtttgttaaacgttagcagataagatctagagtt 27552141  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt--gtatgtagaatcaataaagatcattttac 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  ||||| |||||||||||  ||||  ||||    
T  27552140 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcgtatggagaatcaataagaatca-attac 27552042  T
Q  199 aatttcatcataac-tttcttctctctc 225  Q
    |||||||||||||| |||||||||||||    
T  27552041 aatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17096403 - 17096236
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17096403 ttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctatagtt 17096305  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17096304 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17779943 - 17780156
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||    
T  17779943 ttagtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagtttgttaaaagtttgttagaggctagtagataagatttagagtt 17780041  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-gtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||  ||||  |||||    
T  17780042 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgtatgtagaatcaataagaatca-attaca 17780140  T
Q  200 atttcatcataacttt 215  Q
    ||||||||||||||||    
T  17780141 atttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17895852 - 17895685
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  17895852 ttagtgataatcacaatcagtgattaatcacat-tttattttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataagatctagaatt 17895754  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  17895753 tgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtatttttt 17895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14531916 - 14531749
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||| ||||||||||||| || |||||||||  |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  14531916 ttagttataatcacaatcaatgattaatcacat-tttgttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataagatctagagtt 14531818  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  14531817 tgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17886971 - 17886810
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||| ||||       |||||||||||||||||||| |||||||||||||||    
T  17886971 ttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttataaagta------aagtttgttagaggttagcaaataagatctagagtt 17886879  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17886878 tgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtatttttt 17886810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27574856 - 27574643
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||           ||||||||||||||||||||| ||||    
T  27574856 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgtta-----------gaggttagcagataagatctaaagtt 27574769  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt--gtatgtagaatcaataaagatcattttac 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||  ||||| | |||||||||  ||||  ||||    
T  27574768 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttcgtatggaaaatcaataagaatca-attac 27574670  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    ||||||| ||||| |||  ||||||||    
T  27574669 aatttcaccataatttttctctctctc 27574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  11 tcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattg 110  Q
    ||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| ||||||||| | |    
T  6440979 tcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttag 6440882  T
Q  111 cttgtgcttcaagcaac 127  Q
    ||||| |||||||||||    
T  6440881 cttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  35 tttgttttagtttgttatgaagtttgttacaagtttgttaga 76  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  39 ttttagtttgttatgaagtttgttacaagtttgttagag 77  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 17159659 - 17159700
Alignment:
Q  35 tttgttttagtttgttatgaagtttgttacaagtttgttaga 76  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159659 tttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28644590 - 28644813
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28644590 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 28644688  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||  ||||  |||||    
T  28644689 tgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgcatgtagaatcaataagaatca-attaca 28644787  T
Q  200 atttcatcataactttcttctctctc 225  Q
    |||||||||||| |||||||||||||    
T  28644788 atttcatcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30410458 - 30410235
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  30410458 ttagtgataatcacaatcagtggttaatcacat-tctgttttaatttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagattt 30410360  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||  |||||    
T  30410359 tgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatca-attaca 30410261  T
Q  200 atttcatcataactttcttctctctc 225  Q
    ||||||||||||||||||||||||||    
T  30410260 atttcatcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 30405914 - 30405726
Alignment:
Q  37 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  30405914 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctaga 30405815  T
Q  137 cattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  30405814 tattgtatataagctacctcctttgtacatttttatatgtagaatcaataaagatca-attacaatttcatcataactttcttctctctc 30405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 33071946 - 33072113
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  33071946 ttagtgataatcacaatcagtgattaatcacac-tttcttttagtttgttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtt 33072044  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33072045 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 42234823 - 42234656
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42234823 ttagtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtt 42234725  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  42234724 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 197812 - 197591
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  197812 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 197713  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || | ||||||||||||||||| |||||    
T  197712 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagaagaatcaataaagatca-tttac 197618  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||||    
T  197617 aatttcatcataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 202330 - 202109
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  202330 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 202231  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || | ||||||||||||||||| |||||    
T  202230 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagaagaatcaataaagatca-tttac 202136  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||||    
T  202135 aatttcatcataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 312649 - 312428
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  312649 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 312550  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || | ||||||||||||||||| |||||    
T  312549 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagaagaatcaataaagatca-tttac 312455  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||||    
T  312454 aatttcatcataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 317167 - 316946
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  317167 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 317068  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| | ||  || | ||||||||||||||||| |||||    
T  317067 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtaca-ttcataagaagaatcaataaagatca-tttac 316973  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||||||||||    
T  316972 aatttcatcataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 38757072 - 38757197
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||    
T  38757072 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacc 38757171  T
Q  155 tcctttgtatattttgtatgtagaat 180  Q
    ||||||||||||||| |||| |||||    
T  38757172 tcctttgtatattttatatgcagaat 38757197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 43807612 - 43807485
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  43807612 ttagtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 43807514  T
Q  99 tttgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||||    
T  43807513 tttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 43812171 - 43812044
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  43812171 ttagtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 43812073  T
Q  99 tttgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||||    
T  43812072 tttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41949830 - 41949902
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgtta 74  Q
    |||||||||||||||||||||| |||||||||  | |||||||||||||| |||||||||||||||||| ||||    
T  41949830 ttagtgataatcacaatcagtgattaatcacac-tctgttttagtttgttttgaagtttgttacaagttggtta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 27435314 - 27435169
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagt-ttgttacaagtttgttagaggttagcagataagatctagagt 99  Q
    |||||||||||| || | ||||||||||||||   |||||||||||||||||||  | |||||||||||||| |      ||||| ||| ||  ||| ||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatgagttattgttacaagtttgat------tagcacata-gagttagggt 27435222  T
Q  100 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagcta 152  Q
    ||||||||| |||||||||||||||||| ||  |||| |||||||||||||||    
T  27435221 ttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41945367 - 41945434
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 70  Q
    ||||||||||||||||||| || |||||||| | |||||||||||||||||  ||||| |||||||||||    
T  41945367 ttagtgataatcacaatcaatgattaatcac-actttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38757031 - 38757062
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcaca 32  Q
    ||||||||||||||||||||||||||||||||    
T  38757031 ttagtgataatcacaatcagtggttaatcaca 38757062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 43807445 - 43807391
Alignment:
Q  171 tatgtagaatcaataaa-gatcattttacaatttcatcataactttcttctctctc 225  Q
    |||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  43807445 tatgaagaatcaaaaaaagatcattt-acaatttcatcataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 43812004 - 43811950
Alignment:
Q  171 tatgtagaatcaataaa-gatcattttacaatttcatcataactttcttctctctc 225  Q
    |||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  43812004 tatgaagaatcaaaaaaagatcattt-acaatttcatcataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30695321 - 30695545
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  30695321 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtatataagatctagagtt 30695419  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-gtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||  |||||    
T  30695420 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgtatgtagaatcaataaagatca-attaca 30695518  T
Q  200 atttcatcataa-ctttcttctctctc 225  Q
    ||||||||||||  |||||||||||||    
T  30695519 atttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 32486114 - 32485947
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32486114 ttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtt 32486016  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  32486015 tgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 26336935 - 26336767
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||| ||| |||||||||  ||  |||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  26336935 ttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataagatctagagtt 26336836  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26336835 tgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 19502336 - 19502504
Alignment:
Q  1 ttagtgataatcacaatcagtggttaa-tcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagt 99  Q
    |||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  19502336 ttagtgataatcacaatcagtgattaaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataagatatagagt 19502434  T
Q  100 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  19502435 ttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 36632383 - 36632497
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632383 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 36632482  T
Q  155 tcctttgtatatttt 169  Q
    |||||||||||||||    
T  36632483 tcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12018760 - 12018984
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  12018760 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 12018859  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    | |||||||||||||||||||||||||    
T  12018860 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcataaagtagaatcaataaagatcattttac 12018956  T
Q  199 aa-tttcatcataactttcttctctctc 225  Q
    || ||||||||||| |||||||||||||    
T  12018957 aattttcatcataattttcttctctctc 12018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12023318 - 12023542
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  12023318 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 12023417  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    | |||||||||||||||||||||||||    
T  12023418 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcataaagtagaatcaataaagatcattttac 12023514  T
Q  199 aa-tttcatcataactttcttctctctc 225  Q
    || ||||||||||| |||||||||||||    
T  12023515 aattttcatcataattttcttctctctc 12023542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 43384980 - 43385138
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagt 99  Q
    ||||||||||||| ||| ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||    
T  43384980 ttagtgataatcataattagtggttaatcaca--tttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggt 43385077  T
Q  100 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatat-aagctacctcctt 159  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43385078 ttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 40367688 - 40367517
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagacattgtatataagctac 153  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||    
T  40367688 agtttgttacaagtttgttagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctac 40367589  T
Q  154 ctcctttgtatatttt-gtatgtagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
    |||||||||| |||||  ||||||||||||||||  ||||  ||||||||||||||||| |||||||||||||    
T  40367588 ctcctttgtacattttcatatgtagaatcaataagaatca-attacaatttcatcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 7099500 - 7099374
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  7099500 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 7099401  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||    
T  7099400 tgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 7104069 - 7103943
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  7104069 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 7103970  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||    
T  7103969 tgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 16794139 - 16794360
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatc--tagagtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  16794139 agtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 16794238  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    || |||||||||||||||||| |||||||    
T  16794239 tgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattcataatatagaatcaataaagatca-tttacaa 16794334  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  16794335 ttttcatcataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 16798700 - 16798921
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatc--tagagtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  16798700 agtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 16798799  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||    || |||||||||||||||||| |||||||    
T  16798800 tgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattcataatatagaatcaataaagatca-tttacaa 16798895  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  16798896 ttttcatcataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  21 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttc 120  Q
    ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  20830437 tggttaatcacat-ttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttc 20830339  T
Q  121 aagcaacttagctagacattgtatataagctacct 155  Q
    |||||||||| ||||||||||||||||||||||||    
T  20830338 aagcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40371864 - 40371655
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||| | |||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  40371864 ttagtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagattgttacaagtttgttagaggctagtagataagatctagagtt 40371766  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-gtatgtagaatcaataaagatcattttaca 199  Q
    | |||||||| |||||              | |||| |||||||||||||||||||||||||| |||||  ||||||||||||||||  ||||   ||||    
T  40371765 tattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcatatgtagaatcaataagaatca-actaca 40371681  T
Q  200 atttcatcataactttcttctctctc 225  Q
    |||||||||||| |||||||||||||    
T  40371680 atttcatcataattttcttctctctc 40371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37682065 - 37682277
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||| ||||| |   |||||    
T  37682065 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttgttagaggttagcaaataaggttgttagag 37682153  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   |||||||||||||||||||||| |||||    
T  37682154 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttac 37682249  T
Q  199 aa-tttcatcataactttcttctctctc 225  Q
    || |||||||||||||||||||||||||    
T  37682250 aattttcatcataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37658761 - 37658973
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||           |||||||||||||||||||| ||||| |   |||||    
T  37658761 ttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttgttagaggttagcaaataaggttgttagag 37658849  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   |||||||||||||||||||||| |||||    
T  37658850 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttac 37658945  T
Q  199 aa-tttcatcataactttcttctctctc 225  Q
    || |||||||||||||||||||||||||    
T  37658946 aattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  21 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctag 96  Q
    ||||||||||||  || |||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  20808749 tggttaatcacat-ttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10274574 - 10274698
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| | ||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| |||    
T  10274574 ttagtgataatcacaattaatggttaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtt 10274671  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||  | |||||| |||||||||||    
T  10274672 tgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10277232 - 10277313
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 83  Q
    ||||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||    
T  10277232 ttagtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagc 10277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 7099329 - 7099280
Alignment:
Q  175 tagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  7099329 tagaatcaaaaaagatcattt-acaaattcatcataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 7103898 - 7103849
Alignment:
Q  175 tagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  7103898 tagaatcaaaaaagatcattt-acaaattcatcataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  98 gtttgttacattgcttgtgcttcaagcaactta 130  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8055420 - 8055643
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8055420 ttagtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttgcaagtttgttagaggttagtagataagatctagagtt 8055518  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||    
T  8055519 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatatgtagaatcaataaagatc-ttttacaa 8055617  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  8055618 ttttcatcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8050867 - 8051090
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8050867 ttagtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 8050965  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||  ||||||||||||||||||||| ||||||||    
T  8050966 tgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacatttcatatgtagaatcaataaagatc-ttttacaa 8051064  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  8051065 ttttcatcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12999593 - 12999426
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12999593 ttagtgataataacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 12999495  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12999494 tgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6463555 - 6463345
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||            ||||||||||||||||||| |||||||||||||||||    
T  6463555 ttagtgataatcacaatcagtggttaatcacat-tttgttttagtttgtta------------caagtttgttagaggttagtagataagatctagagtt 6463469  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt-gtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||  |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||  |||||    
T  6463468 tgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagtatgtagaatcaataaagatca-attaca 6463370  T
Q  200 atttcatcataac-tttcttctctc 223  Q
    ||||||||||||| |||||||||||    
T  6463369 atttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 36670534 - 36670755
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  36670534 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 36670633  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   ||| |||||||||||||||||| |||||||    
T  36670634 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatatagaatcaataaagatca-tttacaa 36670729  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  36670730 ttttcatcataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 36675082 - 36675303
Alignment:
Q  3 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||    
T  36675082 agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtt 36675181  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    ||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   ||| |||||||||||||||||| |||||||    
T  36675182 tgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatatagaatcaataaagatca-tttacaa 36675277  T
Q  201 -tttcatcataactttcttctctctc 225  Q
     |||||||||||||||||||||||||    
T  36675278 ttttcatcataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 13271061 - 13270980
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 136  Q
    ||||||||| |||||||||||||||||| | |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271061 agtttgttataagtttgttagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35950567 - 35950443
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||   |||| | ||| |||    
T  35950567 ttagtgataatcacaattagtggttaatcacat-ttaggttcagtttgttatgaattttgttacaagttagttagagattagctcgtaaggt-tagggtt 35950470  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  35950469 tgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  39 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 127  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41093852 - 41093976
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| |||| ||||||| |  || | || ||||||||||||| |||||||||| || ||||||| |||||  ||||| | ||| |||    
T  41093852 ttagtgataatcacaattagtgattaatcatat-ttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggt-tagggtt 41093949  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  41093950 tgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39793859 - 39794070
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39793859 ttagtgataatcacaatcagtggttaatctcat-tctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtt 39793957  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttacaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||  |||||     
T  39793958 tgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcatatgtagaatcaataaagatca-attacat 39794056  T
Q  201 tttcatcataactt 214  Q
    ||||||||||||||    
T  39794057 tttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16588607 - 16588383
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  16588607 ttagtgataatcacaataagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttatcatataagatctagagtt 16588509  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttgtatgtagaatcaataaagatcattttaca 199  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  ||||  |||||    
T  16588508 tgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgtatggagaatcaataagaatca-attaca 16588410  T
Q  200 atttcatcataac-tttcttctctctc 225  Q
    ||||||||||||| |||||||||||||    
T  16588409 atttcatcataacttttcttctctctc 16588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 26311591 - 26311760
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||     
T  26311591 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctact 26311690  T
Q  155 tcctttgtatattttgtatgtagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  26311691 tcctttgtatattttgtatgcagaatcaataaagatca-attacaatttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 26316082 - 26316251
Alignment:
Q  55 agtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 154  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||     
T  26316082 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctact 26316181  T
Q  155 tcctttgtatattttgtatgtagaatcaataaagatcattttacaatttcatcataactttcttctctctc 225  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  26316182 tcctttgtatattttgtatgcagaatcaataaagatca-attacaatttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 43591950 - 43591783
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    |||||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||    
T  43591950 ttagtgataatcacaatcagtgattaatcgcac-tttattttagtttgttatgaagtttgttacaatattgttagaggttagcaaataaaatctagagtt 43591852  T
Q  101 tgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 169  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43591851 tgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10504464 - 10504588
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtt 100  Q
    ||||||||||||||||| |||| |||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| |||    
T  10504464 ttagtgataatcacaattagtgattaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtt 10504561  T
Q  101 tgttacattgcttgtgcttcaagcaac 127  Q
    |||||| | |||||| |||||||||||    
T  10504562 tgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26311550 - 26311581
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcaca 32  Q
    ||||||||||||||||||||||||||||||||    
T  26311550 ttagtgataatcacaatcagtggttaatcaca 26311581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26316041 - 26316072
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcaca 32  Q
    ||||||||||||||||||||||||||||||||    
T  26316041 ttagtgataatcacaatcagtggttaatcaca 26316072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  98 gtttgttacattgcttgtgcttcaagcaactta 130  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44993 - 44771
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  44993 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 44894  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   |||||||||||||||||||||| |||||    
T  44893 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttac 44798  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    || ||||||||||||||||||||||||    
T  44797 aaattcatcataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49573 - 49351
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  49573 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 49474  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||     |   ||||| |||   |||||||||||||||||||||| |||||    
T  49473 tttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcattatgtagaatcaataaagatca-tttac 49378  T
Q  199 aatttcatcataactttcttctctctc 225  Q
    || ||||||||||||||||||||||||    
T  49377 aaattcatcataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 3009 - 3137
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  3009 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 3108  T
Q  99 tttgttacattgcttgtgcttcaagcaac 127  Q
    |||||||||||||||||||||||||||||    
T  3109 tttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7535 - 7757
Alignment:
Q  1 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagat--ctagag 98  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||    
T  7535 ttagtgataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagag 7633  T
Q  99 tttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgtatgtagaatcaataaagatcattttac 198  Q
    |||||||||||||||||| |||||||||| |   ||||| |||||||||||     |   ||||| |||    ||||||||||||||||||||| |||||    
T  7634 tttgttacattgcttgtgtttcaagcaacgt--ttagac-ttgtatataagaccattatcttgtacattcataatgtagaatcaataaagatca-tttac 7729  T
Q  199 aa-tttcatcataactttcttctctctc 225  Q
    || |||||||||||||||||||||||||    
T  7730 aattttcatcataactttcttctctctc 7757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 60270 - 60201
Alignment:
Q  7 ataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttaga 76  Q
    ||||||||||| |||| |||||||||  |   |||||||||||||| || |||||||| |||||||||||    
T  60270 ataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgttaga 60201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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