View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_10 (Length: 441)
Name: NF11091_low_10
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 6584496 - 6584085
Alignment:
| Q |
18 |
acttattctttgttaaaaattaatttcatatctttgaatttcacaggctgatgaagcagaaagccgtgtgaggaagtggggaggaacaattacaattgag |
117 |
Q |
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| T |
6584496 |
acttattctttgttaaaaattaatttcatatctttgaatttgacaggctgatgaagcagaaagccgtgtgaggaagtggggaggaacaatttcaattgag |
6584397 |
T |
|
| Q |
118 |
aattaaatttcattagattgaatgaacaatgaaggcaccaaattcattgcccaacttcacagtactctctgtcaagtcacattgagttgtactcaagata |
217 |
Q |
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| T |
6584396 |
aattaaatttcattaggttgaatgaacaatgaaggcaccaaattcattgcccaacttcacattactctctgtcaagtcacattgagttgtactcaagata |
6584297 |
T |
|
| Q |
218 |
ttattgacttggaaaatctttgagattttgcggtttcaattatggattagtttagcttgttttagtttctagaaattatttaatcaatgatttgtactct |
317 |
Q |
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| T |
6584296 |
ttattgacttggaaaatctctgagattttgcggtttcaattatggattagtttagcttgttttagtttctagaaattatttaatcaatgatttgtactct |
6584197 |
T |
|
| Q |
318 |
tcatttttcttcaaacgcaataatgttgtattattttttaaacaataatattagtaatttattgttagattaatatttttcttcttcgctcatacttgaa |
417 |
Q |
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| T |
6584196 |
tcatttttcttcaaacacaataatgttgtattattttttaaacaacaatattagtaatttattgttagattaatatttttcttctttgctcatacttgaa |
6584097 |
T |
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| Q |
418 |
ccgtgatcttca |
429 |
Q |
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| T |
6584096 |
ccgtaatcttca |
6584085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 12005192 - 12005148
Alignment:
| Q |
364 |
aatattagtaatttattgttagattaatatttttcttcttcgctc |
408 |
Q |
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| T |
12005192 |
aatattaataattaattgttagattaatattttcctacttcgctc |
12005148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 55417486 - 55417450
Alignment:
| Q |
364 |
aatattagtaatttatt-gttagattaatatttttct |
399 |
Q |
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| T |
55417486 |
aatattagtaatttatttgttagattaatatttttct |
55417450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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