View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_12 (Length: 402)
Name: NF11091_low_12
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 37458984 - 37458615
Alignment:
| Q |
15 |
gaggacttaggagaaattgatccgaacctcgataaatcttgtgtccttcttctttccttttattgcagtttgctggcccagtttcataatactggcctgg |
114 |
Q |
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| T |
37458984 |
gaggacgtaggagaaattgacccgaaccttgataaatcttgtgtccttcttctttccttttattgcagtttgctggcccagtttcataatactggcctgg |
37458885 |
T |
|
| Q |
115 |
ttcttttgctgcattatgcgacgagttcaataaaattgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcccttcttttt |
214 |
Q |
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| T |
37458884 |
ttcttttgctgcattatgcgacgagttcaataaaattgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcccttcttttt |
37458785 |
T |
|
| Q |
215 |
atcaaggtttggaatatgccttgaaagttatgtccaagttaccgaaaaatctatcatataaaagacaaataagacattaccgaataaaaacagggtttcg |
314 |
Q |
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| T |
37458784 |
atcaaggtttggaatatgccttgaaagttatgtccaagttaccgaaaaatctatcatataaaagacaaataaggcattactgaataaaaacagggtttcg |
37458685 |
T |
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| Q |
315 |
ctgttgagatctcatttatcatgttacatcacacataataattgatgcagacattaccttagatcatgag |
384 |
Q |
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| T |
37458684 |
ctgttgagatctcatttatcatgttacatcacacataataattgatgcagacattaccttagatcatgag |
37458615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 38250648 - 38250878
Alignment:
| Q |
22 |
taggagaaattgatccgaacctcgataaatcttgtgtccttcttctttc--cttttattgcagtttgctggcccagtttcataatactggcctggttctt |
119 |
Q |
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| T |
38250648 |
taggagaaattgatccgaacctcaataaatcttgtgctcttaatctctctccttttatcgcagtttgctggctcagtttcataacaattgtctagttctt |
38250747 |
T |
|
| Q |
120 |
ttgctgcattatgcgacgagttcaataaaa-------ttgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcccttctt- |
211 |
Q |
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|||||||||| ||||| ||||||||||||| ||||||| ||||| |||| | ||||||||||||||| || |||||| |||||| |||||| |
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| T |
38250748 |
ttgctgcattctgcgatgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctataaagggtcgagaaaaaggcgcttcttg |
38250847 |
T |
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| Q |
212 |
tttatcaaggtttggaatatgccttgaaagt |
242 |
Q |
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| T |
38250848 |
ttcatcaaggtttggaagatgccttgaaagt |
38250878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 302134 - 302044
Alignment:
| Q |
15 |
gaggacttaggagaaattgatccgaacctcgataaatcttgtgtcctt--cttctttccttttattgcagtttgctggcccagtttcataa |
103 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| | |||| ||||||||||| |
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| T |
302134 |
gaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataa |
302044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 22178520 - 22178591
Alignment:
| Q |
26 |
agaaattgatccgaacctcgataaatcttgtgtccttcttctttccttttattgcagtttgctggcccagtttcataa |
103 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||| |
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| T |
22178520 |
agaaattgatctgaacctcgataaatcttgtgtc------ctttcctttcattgcaatttgctggctcagtttcataa |
22178591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 22178608 - 22178657
Alignment:
| Q |
109 |
gcctggttcttttgctgcattatgcgacgagttcaataaaattgaaaatt |
158 |
Q |
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| T |
22178608 |
gcctggttcttttgctgcactctacgatgagttcaataaaattcaaaatt |
22178657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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