View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_13 (Length: 401)
Name: NF11091_low_13
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 35264840 - 35264470
Alignment:
| Q |
20 |
taaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35264840 |
taaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagggaatttggaatcggttcctttctccatatcacttcagctaag |
35264741 |
T |
|
| Q |
120 |
tatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggtttttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35264740 |
tatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggtttttgc |
35264641 |
T |
|
| Q |
220 |
ttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaatgcatcattttaccaannnnnnnaaatatctgacc |
319 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35264640 |
ttcctctgcagacttcctttttttcatcctatttgctgcggcaaccgaacctatttctttttgaatgcatcattttaccaatttttttaaatatctgacc |
35264541 |
T |
|
| Q |
320 |
aatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
390 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35264540 |
aatttgtttgttactttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
35264470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 35272197 - 35272032
Alignment:
| Q |
28 |
gttcaatcaaacaagtgcttgcgaaaatt-ctgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagc |
126 |
Q |
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||||| |||||||||||||||| |||||| | ||||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||| |
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| T |
35272197 |
gttcagtcaaacaagtgcttgcaaaaatttccgatgtccctgtgacttaga--atttggaatctgttcct----ccatattacttcagctaagtatcagc |
35272104 |
T |
|
| Q |
127 |
aacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttctt |
198 |
Q |
| |
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|||||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
35272103 |
aacacatatcagtgctcttcacccaactatcttttgcatccaagttcagcttggagacccaagatccttctt |
35272032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 388
Target Start/End: Complemental strand, 35272004 - 35271802
Alignment:
| Q |
186 |
caagatccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaat |
285 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||| ||||||||||| | |||||| ||||| |||||| |||||||| | ||||||||| |
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| T |
35272004 |
caagatccttcttctgtagcgctgcagtttttgcttaatctgcagactttccttttttgatcctaattgctttggcaacggaacctatatatttttgaat |
35271905 |
T |
|
| Q |
286 |
gcatcattttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatg |
385 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | ||||||||||| |||||||||| | |||||||||| |
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| T |
35271904 |
gcatcattttaccaaattttttaaatattagaccaatttgtttgttactttacaactaaagctatagttcttattttaagacttgttatttctacacatg |
35271805 |
T |
|
| Q |
386 |
ttc |
388 |
Q |
| |
|
||| |
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|
| T |
35271804 |
ttc |
35271802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 35148504 - 35148463
Alignment:
| Q |
320 |
aatttgtttgttgctttacaactaaagatgcagttcttattt |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
35148504 |
aatttgtttgttgccttacaactaaagacgcagttcctattt |
35148463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 35209480 - 35209432
Alignment:
| Q |
102 |
catatcacttcagctaagtatcagcaacacataaccctgctcttcactc |
150 |
Q |
| |
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|||||||||||||||||||||||||| || || || |||||||||||| |
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| T |
35209480 |
catatcacttcagctaagtatcagcagcatgtatccatgctcttcactc |
35209432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 58 - 390
Target Start/End: Complemental strand, 36778578 - 36778252
Alignment:
| Q |
58 |
tgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatc |
157 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| |||||||| || |||||||||| |||||||| |
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| T |
36778578 |
tgatgtccctgtgacttaga--atttggaatctgttcct----ccatatcactttacctaagtatcagaaacacatatccatgctcttcacccaactatc |
36778485 |
T |
|
| Q |
158 |
ttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctg |
257 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||| || || | ||||||||| ||||||||||| | |||||| |||||| |
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|
| T |
36778484 |
ttttgcatccaagttcagcttggagccccaggatccttcttctgtagcgttgcagcttttgcttcatctgcagactttccttttttgatcctaattgctg |
36778385 |
T |
|
| Q |
258 |
cggcaaccgaacctatttctttttgaatgcatcattttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttctt |
357 |
Q |
| |
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|| ||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
36778384 |
tggtaaccgtacctatttatttttgaatgcatcattttaccaaattttttaaatatcagaccaatttgtttgttactttacaactaaagctgtggttctt |
36778285 |
T |
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| Q |
358 |
atttgaagacttgttgtctctacacatgttcat |
390 |
Q |
| |
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|||| |||||||||| | |||||| |||||||| |
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|
| T |
36778284 |
attttaagacttgttatttctacatatgttcat |
36778252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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