View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_16 (Length: 376)
Name: NF11091_low_16
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 6004524 - 6004876
Alignment:
| Q |
16 |
gttctaaaacaaaacacattgtcatcttgaacgagaactcgaaaaggataatctcatatgcatacgtatgggcacgaagagaagacaatccagtaccagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6004524 |
gttctaaaacaaaacacattgtcatcttgaacgagaactcgaaaaggataatctcatatgcatacgtatgggcacgaagagaagacaatccagtaccagc |
6004623 |
T |
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| Q |
116 |
tatggatacgaacatggaggccctttgttccgaacagcaccactgcaagtttctctaactagatcccagtcattgatccataaaaggccttcttcatgta |
215 |
Q |
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| T |
6004624 |
tatggatacgaacatggaggccctttgttccgaacagcaccactgcaagtttctctaactagatcccagtcattgatccataaaaggccttcttcatgta |
6004723 |
T |
|
| Q |
216 |
tcctccttctcgaatacaatgacaaaaaatcctaacagaaccacggcaaatttttctaactagaattcagtctttctatatagaatcaattcaaaagttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6004724 |
tcctccttctcgaatacaatgacaaaaaatcctaacagtaccacggcaaatttttctaactagaattcagtctttctatatagaatcaattcaaaagttt |
6004823 |
T |
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| Q |
316 |
gacatgtaaattcnnnnnnnntgattttctaatacattttaactgatgtccat |
368 |
Q |
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| T |
6004824 |
gacatgtaaattcaaaacaaatgattttctaatacattttaactaatgtccat |
6004876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 664067 - 664119
Alignment:
| Q |
16 |
gttctaaaacaaaacacattgtcatcttgaacgagaactcgaaaaggataatc |
68 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
664067 |
gttctaaaacaaaacacattgtcatcttacacgagaattcgaaaaggctaatc |
664119 |
T |
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