View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_17 (Length: 335)
Name: NF11091_low_17
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 49558784 - 49558459
Alignment:
| Q |
1 |
tggtctcactgcttcaagtatttaccgtttgcttactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaatta |
100 |
Q |
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| T |
49558784 |
tggtctcactgcttcaagtatttaccgtttgcttactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaatta |
49558685 |
T |
|
| Q |
101 |
gggtttcaaccttccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
200 |
Q |
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| T |
49558684 |
gggtttcaaccttccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
49558585 |
T |
|
| Q |
201 |
ggggttgttctgaagatgatatttttaatgcatttaggaagcaacccaactttatgttacggtctccagacaaactcagttcagtgatgagattttgggt |
300 |
Q |
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| T |
49558584 |
ggggttgttctgaagatgatatttttaatgcatttaggaagcaacccaactttatgttacggtctccagacaaactca-atcagtgatgagattttgggt |
49558486 |
T |
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| Q |
301 |
cgatgagcttgggtgggatcctttgct |
327 |
Q |
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| T |
49558485 |
cgatgagcttgggtgggatcctttgct |
49558459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 49904495 - 49904805
Alignment:
| Q |
13 |
ttcaagtatttaccgtttgcttactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaacct |
112 |
Q |
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| T |
49904495 |
ttcaagtatttaccgtttgcttactagcagaccttccacaatatgttgtactgatttgaaaaaggctttggaggagattaaggaattagggtttcaacct |
49904594 |
T |
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| Q |
113 |
tccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctg |
212 |
Q |
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| T |
49904595 |
tccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatcccaatgggatgccaaagttgatgtcttgaagagttggggttgttctg |
49904694 |
T |
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| Q |
213 |
aagatgatatttttaatgcatttaggaagcaacccaactttatgttacggtctccagacaaactcagttcagtgatgagattttgggtcgatgagcttgg |
312 |
Q |
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| T |
49904695 |
aagatgcagtttttaatgcatttaggaagcaacccaactttatgctaaggtctccagataaactcaatgcagtgatgagtttttgggtcgaggagcttgg |
49904794 |
T |
|
| Q |
313 |
gtgggatcctt |
323 |
Q |
| |
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|||||||||| |
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| T |
49904795 |
ttgggatcctt |
49904805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 49562935 - 49562712
Alignment:
| Q |
13 |
ttcaagtatttaccgtttgcttactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaacct |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||| | | | || ||||| | |||| |||||||||||||||||||||||||||| ||| |
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| T |
49562935 |
ttcaagtatttaccgtttacttactagcagaccttctgtaattttttcatctgttttgaggacggctgtggaggagattaaggaattagggtttcatcct |
49562836 |
T |
|
| Q |
113 |
tccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctg |
212 |
Q |
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|| | ||||| |||||||| ||||| |||||||||| ||| |||| |||||||| |||||| | ||| | |||| ||||||||| ||||||| ||||| |
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| T |
49562835 |
tctagttacaatttttgtgtcgcattgttggccaaaaaggccatcactaaatcccaatgggattccaaagtcgatgccttgaagagctggggttattctg |
49562736 |
T |
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| Q |
213 |
aagatgatatttttaatgcattta |
236 |
Q |
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|||||| ||||| | |||||||| |
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| T |
49562735 |
aagatgcaattttaactgcattta |
49562712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 9421406 - 9421325
Alignment:
| Q |
119 |
tacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
200 |
Q |
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| T |
9421406 |
tacaatttttgtgtggcattacccgacaaaagggctatcaccaaatcccaatgggatgccaaagttgatgccttgaagagtt |
9421325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 9441451 - 9441370
Alignment:
| Q |
119 |
tacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
200 |
Q |
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| T |
9441451 |
tacaatttttgtgtggcattaccggccaaaagggctatctccaaatcccaatgggacgccaaagttgatgcctcgaagagtt |
9441370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 41488411 - 41488351
Alignment:
| Q |
41 |
agaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattag |
101 |
Q |
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|||||||||||||||||| ||| | |||||||||| | | ||||||||||||||| |||| |
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| T |
41488411 |
agaccttctataatatgtcctactaatttgaaaaacgttgaggaggagattaaggagttag |
41488351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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