View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11091_low_18 (Length: 313)
Name: NF11091_low_18
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 49558822 - 49559118
Alignment:
| Q |
1 |
gatcgctaatggaagtaggacaagcgattatagaatgaatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49558822 |
gatcgctaatggaagtaggacaagcgattatagaatgaatagcttttttatcagaggggcagaaactccttaccaattcaaaagcagggataatgtgttt |
49558921 |
T |
|
| Q |
101 |
gtcgaggcttacacgaacaaaacgagggcttctggtgatggcggcaacaatgtcttggggagaagcacctttggaggataaaaattgaatctttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49558922 |
gtcgaggcttacacgaacaaaacgagggcttctggtgatggcggcaacaatgtcttggggagaagcacctttggagtataaaaattgaatctttggcaaa |
49559021 |
T |
|
| Q |
201 |
atagatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataacagaatcgagtttgtgaggggtgtttaaacgaagttgtttg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49559022 |
atagatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataaccgaatcggctttgtgaggggtgtttaaacgaagttgtttg |
49559118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 49904408 - 49904244
Alignment:
| Q |
38 |
aatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaaacgagggcttctggtg |
137 |
Q |
| |
|
||||||||| | |||||| || ||||||||||||||||||||||||| |||||| |||| ||||| |||||| || || ||| ||||||||||| |
|
|
| T |
49904408 |
aatagctttatgatcagaaggacagaaacttcttaccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggta |
49904309 |
T |
|
| Q |
138 |
atggcggcaacaatgtcttggggagaagcacctttggaggataaaaattgaatctttggcaaaat |
202 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
49904308 |
acggtggcaacaatgtctttgggagaagcacctttggaggctaaaaattgaaactttggcaaaat |
49904244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 49563022 - 49563119
Alignment:
| Q |
38 |
aatagcttttttatcagaggggcagaaacttcttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaaacgagggcttctgg |
135 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
49563022 |
aatagctttcttatcagagggacagaaacttcttaccaattcaaaagtagggataatgtgtttgttgaggcttacacgaaggaaacgagggtttctgg |
49563119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 49904198 - 49904105
Alignment:
| Q |
204 |
gatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataacagaatcgagtttgtgaggggtgtttaaacgaagttgtttg |
297 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||| |||||| || ||||| ||||||||| ||||| |
|
|
| T |
49904198 |
gatggtttgtatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttg |
49904105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 49563232 - 49563324
Alignment:
| Q |
204 |
gatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataacagaatcgagtttgtgaggggtgtttaaacgaagttgttt |
296 |
Q |
| |
|
||||| ||||||||||| | |||||||| | |||||||||||||||| ||||||| |||| |||| | |||||||| ||||||||| |||| |
|
|
| T |
49563232 |
gatggattgtatctgatcaatggagaaaccatgggttttgaaaaaggcaataacagtatcgggtttatccggggtgttgaaacgaagtcgttt |
49563324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 9445880 - 9445909
Alignment:
| Q |
60 |
cagaaacttcttaccaattcaaaagcaggg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9445880 |
cagaaacttcttaccaattcaaaagcaggg |
9445909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 41483504 - 41483541
Alignment:
| Q |
63 |
aaacttcttaccaattcaaaagcagggataatgtgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41483504 |
aaacttcttaccaattcaaaagcagggataatgtgttt |
41483541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 29271627 - 29271656
Alignment:
| Q |
60 |
cagaaacttcttaccaattcaaaagcaggg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29271627 |
cagaaacttcttaccaattcaaaagcaggg |
29271656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University