View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_19 (Length: 310)
Name: NF11091_low_19
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 40027902 - 40027609
Alignment:
| Q |
18 |
ggtcataaatagaaacaataaaagagttacgtatggtgtttcaaatataagcaaaatgatctaatattttgttgcaaataaagatataaagataataaaa |
117 |
Q |
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| T |
40027902 |
ggtcacaaatataaacaataaaaaagttatgtatggtgtttcaaatataagcaaaatgatttaatattttgttgcaaataaagatataaagataataaaa |
40027803 |
T |
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| Q |
118 |
aagttatacttttgtccttaaaaattagtcatatatttccatctaagtatataactt-tcccagttaaccttattcaacacggctgccgagtttgaacaa |
216 |
Q |
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| T |
40027802 |
aagttatacttttgtccttaaaaattagtcatatatttccatctaagtatatgacttaacccagttaaccttattcaacacggctgccgagtttgaacaa |
40027703 |
T |
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| Q |
217 |
tattgaatcaaatagaatcagacagtgacgaaaacaaaaacatttttggttaaagaatcatcatattatattccccccaataaatagcttatat |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40027702 |
tattgaatcaaacagaatcagacagtgacgaaaacaaaaacatttttggttaaagaatcatcatattatattccccccaatcaatagcttatat |
40027609 |
T |
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