View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_low_20 (Length: 307)

Name: NF11091_low_20
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_low_20
NF11091_low_20
[»] chr7 (1 HSPs)
chr7 (1-298)||(36969793-36970090)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 36969793 - 36970090
Alignment:
Q  1 ttgtatcattcgaattgaatggaatgtgctgttaattttcagtggtttacacaatcagattcaaaccctaagcccgacattaatttcttgcatgcatatc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36969793 ttgtatcattcaaattgaatggaatgtgctgttaattttcagtggtttacacaatcagattcaaaccctaagcccgacattaatttcttgcatgcatatc 36969892  T
Q  101 tacatttcctaatgtaaccaattaattgttctagaactctccgaaaaaggtatacaaacttatcgagttcccagtctgattcgttctacaattttacatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36969893 tacatttcctaatgtaaccaattaattgttctagaactctccgaaaaaggtatacaaacttatcaagttcccagtctgattcgttctacaattttacatg 36969992  T
Q  201 aacccgatgttttcccgattattcacaggatttcctttgtttcttatatttaaatgttaattttatgctattgcagcttcttttgtctctattctctg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36969993 aacccgatgttttcccgattattcacaggatttcctttgtttcttatatttaaatgttaattttatgctattgcagcttcttttgtctctattctctg 36970090  T

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