View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_low_21 (Length: 304)

Name: NF11091_low_21
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_low_21
NF11091_low_21
[»] chr5 (1 HSPs)
chr5 (1-289)||(40265163-40265451)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 40265451 - 40265163
Alignment:
Q  1 aagttgtgttttcctatggcaacacctctttgtgttgcaacatagattactgctaccagttaaccaatatatgcatgcattctattcaactaattaccat 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265451 aagtcgtgttttcctatggcaacacttctttgtgttgcaacatagattactgctaccagttaaccaatatatgcatgcattctattcaactaattaccat 40265352  T
Q  101 gactttcttttacataggttgcaatagctttgccattcaaatatggcagacattgctctctccgttgcagccaaggtttcagaatatttggtcaagcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265351 gactttcttttacataggttgcaatagctttgccattcaaatatggcagacattgctctctccgttgcagccaaggtttcagaatatttggtcaagcctt 40265252  T
Q  201 tactacaccatgctcgttacatgttcggtttcaacaaaatcgttacaaatctttatgataaaaaagacaagttgatattaacccaaaag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265251 tactacaccatgctcgttacatgttcggtttcaacaaaatcgttacaaatctttatgataaaaaagacaagttgatattaacccaaaag 40265163  T

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