View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_22 (Length: 295)
Name: NF11091_low_22
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 40265463 - 40265745
Alignment:
| Q |
1 |
caacaacaacaagccttatccccctaagtggagtcaactatatgaatcaaattacactttaatgttaagaaaagttagttagagttcgtttgggggaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40265463 |
caacaacaacaagccttatccccctaagtggagtcgactatatggatcaaattacactttaatgttaagaaaagttagttagagttcgtttgggggaggg |
40265562 |
T |
|
| Q |
101 |
ccgcttctacctataaactcatatttacggtttatcttatctaatgtcgaactcttaacacccccctcatatcgagaactgaacatctgaagcgtgacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40265563 |
ccgcttctacctataaactcatatttacggtttatcttatctaacgtggaactcttaacatccccctcatatcgagaactgaacatctgaagcgtgacca |
40265662 |
T |
|
| Q |
201 |
aatgttctgaactcttaacagccccccattaaattttaattttgtttaacatatatatgtacatattataatccattatttca |
283 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40265663 |
aatattctgaactcttaacagccccccattaaattttaattttgtttaacatatatatgtacatattataatccattatttca |
40265745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36101778 - 36101833
Alignment:
| Q |
1 |
caacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
55 |
Q |
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|||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||| |
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| T |
36101778 |
caacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattac |
36101833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12734981 - 12734924
Alignment:
| Q |
1 |
caacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattacac |
57 |
Q |
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|||||||||| |||||||||||| |||||||| ||| |||| ||| |||||||||||| |
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| T |
12734981 |
caacaacaaccaagccttatcccactaagtggggtcgactacatggatcaaattacac |
12734924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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