View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11091_low_23 (Length: 280)
Name: NF11091_low_23
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 5568499 - 5568247
Alignment:
| Q |
18 |
ctttgtcaccagccaaagtttcaaatcagcataaataattaggaaggttcaaatgttcatataaacatccagtatttgtaggctgattttgatttaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5568499 |
ctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgattttgatttaatta |
5568400 |
T |
|
| Q |
118 |
tcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaattatcttttgacaataacatttccgaatgccaaatcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568399 |
tcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaattatcttttgacaataacatttccgaatgccaaatcat |
5568300 |
T |
|
| Q |
218 |
agccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568299 |
agccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
5568247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 5608222 - 5607967
Alignment:
| Q |
18 |
ctttgtcaccagccaaagtttcaaatcagcataaataattaggaaggttcaaatgttcatataaacatccagtatttgtaggctgattttgatttaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5608222 |
ctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgattttgatttaatta |
5608123 |
T |
|
| Q |
118 |
tcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaattatcttttgac---aataacatttccgaatgccaaat |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
5608122 |
tcattgaaactgcaacttcttcatgattgtctttatagctatgtatcaccttcattaatcaatgatcttttgacatgaataacatttccgaatgccaaat |
5608023 |
T |
|
| Q |
215 |
catagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5608022 |
catagccaatcccttttctgaattatttccactaaatgctatttttccattctgtg |
5607967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 5561940 - 5561761
Alignment:
| Q |
89 |
gtatttgtaggctgattttgatttaattatcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaattatctttt |
188 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5561940 |
gtatttttaggctgattttgttttaattatgattga--ctgcaacttcttcgtgattgtctttattgctatgtatcaccttcattaatcaattatctttt |
5561843 |
T |
|
| Q |
189 |
gacaataacatttccgaatgccaaatcatagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
270 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5561842 |
gacaattacatttcctaatgccaaatcatagccaatcctttttctgaattatttccactggatgctatttttccattctgtg |
5561761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University