View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_24 (Length: 280)
Name: NF11091_low_24
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34431996 - 34431723
Alignment:
| Q |
1 |
ttctgtgatgattggtggtggtgttcaagttcaaccagaaatggagataagatttgatgggcatttggtggttcatgtgaagcacttgcaatggaaattt |
100 |
Q |
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| T |
34431996 |
ttctgtgatgattggtggtggtgttcaagttcaaccagaaatggagataagatttgatgggcatttggtggttcatgtgaagcacttgcaatggaaattt |
34431897 |
T |
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| Q |
101 |
agagggaatgaattgattcatctcaacaaaatgagagttgaggtatattgggatgttcatgattggttatttagtcctggtttaaaacatgctttgttca |
200 |
Q |
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| T |
34431896 |
agagggaatgaattgattcatctcaacaaaatgagagttgaggtatattgggatgttcatgattggttatttagtcctggtttaaaacatgctttgttca |
34431797 |
T |
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| Q |
201 |
tttttaagcctgtttttacatgtcattctatgttaccattttctttattttcaccatctttgtgatgtccatct |
274 |
Q |
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| T |
34431796 |
tttttaagcctgtttttacatgtcattctatgtcaccattttctttattttcaccatctttgtcatgttcatct |
34431723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 43402926 - 43402744
Alignment:
| Q |
28 |
agttcaaccagaaatggagataagatttgatgggcatttggtggttcatgtgaagcacttgcaatggaaatttagagggaatgaattgattcatctcaac |
127 |
Q |
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|||||| ||||| |||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||| |||||||| ||||||| ||||||| | |
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| T |
43402926 |
agttcagccagagatggagataagaattgatggacatttggtgattcatgtgaagcatttgcaatggaagtttagaggtaatgaatcagttcatcttagt |
43402827 |
T |
|
| Q |
128 |
aaaatgagagttgaggtatattgggatgttcatgattggttatttagtcctggtttaaaacatgctttgttcatttttaagcc |
210 |
Q |
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| T |
43402826 |
aaaatgagaattgaagtttattgggatgttcatgattggttatttagtcctggtttgaaacatgctttgtttatttttaagcc |
43402744 |
T |
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