View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11091_low_27 (Length: 252)
Name: NF11091_low_27
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 40027588 - 40027444
Alignment:
| Q |
1 |
aaaatattctcacaatttagtcggtcaatcacaaattcactgcgacatt-atttttccaatcatatacacttaaactattgaaactaacaccaaaatata |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40027588 |
aaaatattctcacaatttagtcggtcagtcacaaattcactgcgacatttatttttccgatcatatacacttaaactattgaaactaacaccaaaatata |
40027489 |
T |
|
| Q |
100 |
ccaagtcaaagaagctgcgtatgaaaacaaattttaactttgcac |
144 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40027488 |
ccaagtcaaagaagttgcgtatgaaaacaaattttaactttgcac |
40027444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 40027444 - 40027322
Alignment:
| Q |
114 |
ctgcgtatgaaaacaaattttaactttgcacactttgttcaacttcaacttttcatgtgaacacgttacacgtacgtcccaattgtgtttttagaaaata |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40027444 |
ctgcgtatgaaaacaaatgttaactttgcagactttgttcaacttcaacttttcatgtgaacacgttacacgtacgtcccaattgtgtttttagaaaata |
40027345 |
T |
|
| Q |
214 |
acctagttgactatctttaatga |
236 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
40027344 |
acctttttgactatctttaatga |
40027322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 40069881 - 40069771
Alignment:
| Q |
44 |
gacattatttttccaatcatatacacttaaactattgaaactaacaccaaaatataccaagtcaaagaagctgcgtatgaaaacaaattttaactttgca |
143 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| ||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
40069881 |
gacattatttttccaatcata--cacttaaa-tattgaaactaccat-aaaatataccaagtcaaacaagttgcttatgaaaacaagttttaactttgca |
40069786 |
T |
|
| Q |
144 |
cactttgttcaactt |
158 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
40069785 |
cacatcgttcaactt |
40069771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University