View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_low_28 (Length: 246)

Name: NF11091_low_28
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_low_28
NF11091_low_28
[»] chr5 (4 HSPs)
chr5 (55-217)||(35868403-35868565)
chr5 (54-219)||(19030548-19030723)
chr5 (53-213)||(29374536-29374696)
chr5 (52-139)||(19030464-19030551)
[»] chr2 (1 HSPs)
chr2 (80-216)||(43779397-43779534)
[»] chr4 (1 HSPs)
chr4 (80-213)||(34934117-34934250)
[»] chr8 (3 HSPs)
chr8 (73-209)||(42351691-42351828)
chr8 (79-174)||(25843041-25843137)
chr8 (124-214)||(29282634-29282725)
[»] chr1 (2 HSPs)
chr1 (73-174)||(7608541-7608642)
chr1 (61-160)||(8382284-8382384)
[»] chr7 (2 HSPs)
chr7 (1-57)||(36969655-36969711)
chr7 (81-166)||(44961880-44961966)
[»] chr6 (1 HSPs)
chr6 (123-213)||(8383101-8383191)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 35868403 - 35868565
Alignment:
Q  55 agtttgtgtttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagtagcttttccaaatca 154  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  35868403 agtttgtatttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctacatataatagcttttccaaatca 35868502  T
Q  155 cggcaatttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagctattag 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35868503 cggcaatttttgccttgggacgcgagaaagctgcttccaccgcacatccaaacaagctattag 35868565  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 19030548 - 19030723
Alignment:
Q  54 tagtttgtgtttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagtagcttttccaaatc 153  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  19030548 tagtttgtgtttggctctacggtacaattttcacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctacatatagtagctttttcaaatc 19030647  T
Q  154 ac----------ggcaatttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagctattagtc 219  Q
    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19030648 acggcaatttttggcaatttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagctattagtc 19030723  T

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Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 29374696 - 29374536
Alignment:
Q  53 ttagtttgtgtttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagtagcttttccaaat 152  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| ||||||| || ||||||||||||||||||||    
T  29374696 ttagtttgtgtttggctctacggtacaatttccacatcaagacaaaatcacggtagaaaccacatttatactgaagttacatatagtagcttttccaaat 29374597  T
Q  153 cacggcaatttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagcta 213  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29374596 cacggcaatttttgccttgggatgcgagaaagctgcttccaccgcacatccaaacaagcta 29374536  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 19030464 - 19030551
Alignment:
Q  52 tttagtttgtgtttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagt 139  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19030464 tttagtttgtgtttggctctatggtacaatttccacatcaaggcaaaatcacagcaggaaccacgtttacactgaagctacatatagt 19030551  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 43779534 - 43779397
Alignment:
Q  80 atttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttgccttgggacacg 178  Q
    |||||||||||||  |||||||||||||||||| ||||||| || |||||||| |||||||||| ||||||||||||| |||||||||||||||||| |     
T  43779534 atttccacatcaaaccaaaatcacggcaggaactcacgtttgcagtgaagctacatatagtagcctttccaaatcacgacaatttttgccttgggacgca 43779435  T
Q  179 agaaagctgcttccaccgcacatccaaacaagctatta 216  Q
    ||||| ||  ||||| ||||||||||||||||||||||    
T  43779434 agaaaacttgttccatcgcacatccaaacaagctatta 43779397  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 34934117 - 34934250
Alignment:
Q  80 atttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttgccttgggacacga 179  Q
    ||||||||||||||  |||||||||  ||||||||||||| || |||| ||| |||||||||||||||||||| || ||||||||||| ||||||| |||    
T  34934117 atttccacatcaagcaaaaatcacgctaggaaccacgtttgcagtgaaactacatatagtagcttttccaaataactgcaatttttgctttgggacgcga 34934216  T
Q  180 gaaagctgcttccaccgcacatccaaacaagcta 213  Q
    |||| ||  |||||||||||||||||||||||||    
T  34934217 gaaaacttattccaccgcacatccaaacaagcta 34934250  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 42351828 - 42351691
Alignment:
Q  73 cggtacaatttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttgccttg 171  Q
    |||||| |||| ||||||||| |||||||||||||||||  ||||||| || |||||||| ||||||| |||||| |||||||||||||||||||| ||     
T  42351828 cggtaccattttcacatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatcacggcaatttttgcttta 42351729  T
Q  172 ggacacgagaaagctgcttccaccgcacatccaaacaa 209  Q
    |||| ||||||| ||  ||||||  |||||||||||||    
T  42351728 ggacgcgagaaaacttgttccacgacacatccaaacaa 42351691  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 25843041 - 25843137
Alignment:
Q  79 aatttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttgccttggga 174  Q
    ||||||||||||||  ||||||||| |||||    |||||||  | |||||||| | || ||||| |||||||||||||||||||||||||||||||    
T  25843041 aatttccacatcaaaccaaaatcacagcaggtggtcacgtttgtagtgaagctacacatggtagcgtttccaaatcacggcaatttttgccttggga 25843137  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 29282634 - 29282725
Alignment:
Q  124 tgaagctatatatagtagcttttccaaatcacggcaa---tttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagctat 214  Q
    |||||||| |||| || ||||||||||||||||  ||   ||||||||||||||| ||||||| |   | ||| ||||||||||||||||||||    
T  29282634 tgaagctacatatggttgcttttccaaatcacg--aattttttttgccttgggacgcgagaaaacctgtaccatcgcacatccaaacaagctat 29282725  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 7608642 - 7608541
Alignment:
Q  73 cggtacaatttccacatcaaggcaaaatcacggcaggaaccacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttgccttgg 172  Q
    |||||| |||| ||||||||||||||||||||| | ||||||||||| |  |||||||| |||||||||||||||||||||||  |||||||||||||||    
T  7608642 cggtaccattttcacatcaaggcaaaatcacggtaagaaccacgtttgctgtgaagctacatatagtagcttttccaaatcacatcaatttttgccttgg 7608543  T
Q  173 ga 174  Q
    ||    
T  7608542 ga 7608541  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 8382384 - 8382284
Alignment:
Q  61 tgtttggctctacggtacaatttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctatatatagtagcttttccaaatcacggca 159  Q
    ||||||||| | |||| | |||||||||||||| |||||||||||||||||| ||||||| || ||||||||  ||||||||||||||| ||||||||||    
T  8382384 tgtttggctgtgcggtgccatttccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaatcacggca 8382285  T
Q  160 a 160  Q
    |    
T  8382284 a 8382284  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36969711 - 36969655
Alignment:
Q  1 catctccctcaatatgtttcagttccaatggtaatttaatttcttgtctgttttagt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36969711 catctccctcaatatgtttcagttccaatggtaatttaatttcttgtctgttttagt 36969655  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 44961966 - 44961880
Alignment:
Q  81 tttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctatatatagtagcttttccaaatcacggcaatttttg 166  Q
    |||||||||||||  ||||| |  | |||||| ||||||| || |||||||| ||||||||| |||| |||||||||||||||||||    
T  44961966 tttccacatcaagcgaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagttttttcaaatcacggcaatttttg 44961880  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 8383191 - 8383101
Alignment:
Q  123 ctgaagctatatatagtagcttttccaaatcacggcaatttttgccttgggacacgagaaagctgcttccaccgcacatccaaacaagcta 213  Q
    |||||| ||||||||||||||||||||||| ||  |||||||| ||||||| |  ||||||| | ||||||||||||||||||| ||||||    
T  8383191 ctgaagttatatatagtagcttttccaaattacaacaatttttaccttggggcgtgagaaagttacttccaccgcacatccaaataagcta 8383101  T

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