View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_29 (Length: 244)
Name: NF11091_low_29
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_29 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9828352 - 9828579
Alignment:
| Q |
1 |
tcttatgacatcacaagcattaatataattgtaacttttctgcatacctgtcagcatcaaaagagctaaatccacgcccgttgcggttcaatgttacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828352 |
tcttatgacatcacaagcattaatataattgtaacttttctgcatacctgtcagcatcaaaagagctaaatccacgcccgttgcggttcaatgttacaaa |
9828451 |
T |
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| Q |
101 |
gtttgtctgctcctcaggagtttgctgtcgaaaaagaacacatacagccttcatacataacacttgatcctttccgaagtctgcacacatatcaacctcc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9828452 |
gttcgtctgctcctcaggagtttgctgtcgaaaaagaacacatacagccttcatacataacacttgatcctttccgaagtcagcacacatatcaacctcc |
9828551 |
T |
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| Q |
201 |
gattcccacttaattttgtgcttctttt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
9828552 |
gattcccacttaattttgtgcttctttt |
9828579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 9813574 - 9813792
Alignment:
| Q |
12 |
cacaagcattaatataattgtaacttttctgcatacctgtcagcatcaaaagagctaaatccacgcccgttgcggttcaatgttacaaagtttgtctgct |
111 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||| | | || |||||||||||||||| |||||| |
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| T |
9813574 |
cacaagcattaatctaaatgtaacttttctgcatacctgctagcatcacaagagctaagtccacgcccttcggggctcaatgttacaaagttcatctgct |
9813673 |
T |
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| Q |
112 |
cctcaggagtttgctgtcgaaaaagaacacatacagccttcatacataacacttgatcctttccgaagtctgcacacatatcaacctccgattcccactt |
211 |
Q |
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| T |
9813674 |
cctcggaagtttggtgtcgaaaaagaacacatacagccttcatacataacacaggatcctttccgaagtctgcacgcatttcaacctccgattcccactt |
9813773 |
T |
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| Q |
212 |
aattttgtgcttcttttga |
230 |
Q |
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| T |
9813774 |
aattttatgcttcttttga |
9813792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 9824076 - 9824252
Alignment:
| Q |
26 |
taattgtaacttttctgcatacctgtcagcatcaaaagagctaaatccacgcccgttgcggttcaatgttacaaagtttgtctgctcctcaggagtttgc |
125 |
Q |
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||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| |||| | |||||||||||||||| |||||||||||| ||||||| |
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| T |
9824076 |
taattgtaacttttctgcaaacctgttagcattaaaagagctaaatcgacgcc--ttgcagctcaatgttacaaagttcatctgctcctcagaagtttgc |
9824173 |
T |
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| Q |
126 |
tgtcgaaaaagaacacatacagccttcatacataacacttgatcctttccgaagtctgcacacatatcaacctccgatt |
204 |
Q |
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| T |
9824174 |
tgtcgaaaaagaacacatacagccttcatacattacacaggatcctttccgaagtctgcatgcatctcaacctccgatt |
9824252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 9803625 - 9803734
Alignment:
| Q |
119 |
agtttgctgtcgaaaaagaacacatacagccttcatacataacacttgatcctttccgaagtctgcacacatatcaacctccgattcccacttaattttg |
218 |
Q |
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|||||| |||||| ||| | | || ||| |||||||||||||||| ||||||| || || | |||| ||| ||||||||| ||||||||||||||||| |
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| T |
9803625 |
agtttgttgtcgataaatagcgcaaacaaccttcatacataacacaggatccttcccaaattatgcaagcatctcaacctccaattcccacttaattttg |
9803724 |
T |
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| Q |
219 |
tgcttctttt |
228 |
Q |
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|||||||||| |
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| T |
9803725 |
tgcttctttt |
9803734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 6921 - 6985
Alignment:
| Q |
70 |
atccacgcccgttgcggttcaatgttacaaagtttgtctgctcctcaggagtttgctgtcgaaaa |
134 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
6921 |
atccacgcccgttgcggctcaaagttacaaagttcatctgctcctcacaagtttgctgtcgaaaa |
6985 |
T |
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