View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_3 (Length: 618)
Name: NF11091_low_3
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 41095887 - 41095568
Alignment:
| Q |
25 |
ggggtgctgcaaagtccaaagtatctttctactatgtccatcacttattcttaatgaatgtaagaatagaaagctcnnnnnnntaggtatatatctaaaa |
124 |
Q |
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| T |
41095887 |
ggggtgctgcaaagtccaaagtatctttctactatgtccatcacttattcttaatgaatgtaagaatagaaagctcaaaaaaataggtatatatctaaaa |
41095788 |
T |
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| Q |
125 |
gaattgccaagaaaaaagaataacatattgtcctcatcactgagcagctggtggctcagaactagcaacttgctcaccctcaactgctggaggatcttgt |
224 |
Q |
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| T |
41095787 |
gaattgccaagaaaaaagaataacatattgtcctcatcactgagcagctggtggctcagaactagcaacttgctcaccctcaactgctggaggatcttgt |
41095688 |
T |
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| Q |
225 |
tgttcaccattagcagaagcagcagcagcagtatcatcttttgtaggtgtagtaggcttattttctgcagaacctggagaggcagtggcagttggtgttg |
324 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41095687 |
tgttcaccattaacagaagcagcagcagcagcatcatcttttgtaggtgtagtaggcttattttctgcagaacctggagaggcagtagcagttggtgttg |
41095588 |
T |
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| Q |
325 |
agcttttctctgccttgtca |
344 |
Q |
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|||||||||||||||||||| |
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| T |
41095587 |
agcttttctctgccttgtca |
41095568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 415 - 605
Target Start/End: Complemental strand, 41095497 - 41095307
Alignment:
| Q |
415 |
gtgggggaggaggcatcatatgagtcgggggattctgtttaagcttcaaaatcatttggcgcattctagaaagatcggtaggtttcccaggctttggacc |
514 |
Q |
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| T |
41095497 |
gtgggggaggaggcatcatatgagtcgggggattctgtttaagcttcaaaatcatttggcgcattctagaaagatcggtaggtttcccaggctttggacc |
41095398 |
T |
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| Q |
515 |
ttgaataacatgaaccgaaggtttattgtcggcttcttttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgct |
605 |
Q |
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| T |
41095397 |
ttgaataacatgaaccgaaggtttattgtcggcttcttttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgct |
41095307 |
T |
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