View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11091_low_30 (Length: 242)
Name: NF11091_low_30
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 37458965 - 37459160
Alignment:
| Q |
5 |
tcaatttctcctaagtcctcactgatcatgtagacctttattcactaatcaagaacatagtagagtacaagaattgcaaaatttcaatcttgaactctta |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37458965 |
tcaatttctcctacgtcctcactgatcatgtagacctttattcactaatcaagaacatagtagagtacaagaattgcaaaatttcaatcttgaactctta |
37459064 |
T |
|
| Q |
105 |
ccataattgcaggaaaatgtattttgtttgcgttatgaagtagcaattcatgaaaattgtaagttggtatactgccaccatgttgcattggatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37459065 |
ccataattgcaggaaaatgtattttgtttgcgttatgaagtagcaatgcatgaaaattgtaagttggtatactgccaccatgttgcattggatttg |
37459160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 38255284 - 38255228
Alignment:
| Q |
144 |
gtagcaattcatgaaaattgtaagttggtatactgccaccatgttgcattggatttg |
200 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||| |
|
|
| T |
38255284 |
gtagcaattcatgaaaattgtaatttagtatattgccactatgttgcattgaatttg |
38255228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 38250294 - 38250225
Alignment:
| Q |
82 |
aaaatttcaatcttgaactcttaccat-aattgcaggaaaatg-tattttgtttgcgttatgaagtagca |
149 |
Q |
| |
|
|||| |||||||||||| |||||| || ||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
38250294 |
aaaaattcaatcttgaattcttacaatgaattgcaggaaaatgtttttttgtttatgttatgaagtagca |
38250225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 22178223 - 22178167
Alignment:
| Q |
144 |
gtagcaattcatgaaaattgtaagttggtatactgccaccatgttgcattggatttg |
200 |
Q |
| |
|
||||||||||||||||||||| | || ||||| |||||| ||||||||||| ||||| |
|
|
| T |
22178223 |
gtagcaattcatgaaaattgtcatttagtatattgccactatgttgcattgaatttg |
22178167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 22178530 - 22178453
Alignment:
| Q |
3 |
gatcaatttctcctaagtcctcactgatcatgtagacctttattcactaatcaag-aacatagtagagtacaagaatt |
79 |
Q |
| |
|
||||||||||| || ||||||||||||| |||| |||||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
22178530 |
gatcaatttcttcttcgtcctcactgatcgtgtacacctttattccttaatcaagtgacaatgtagagtacaagaatt |
22178453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University