View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_low_32 (Length: 228)

Name: NF11091_low_32
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_low_32
NF11091_low_32
[»] chr5 (13 HSPs)
chr5 (1-217)||(15428150-15428366)
chr5 (9-213)||(15358612-15358804)
chr5 (15-147)||(15332561-15332693)
chr5 (9-216)||(15348340-15348535)
chr5 (15-143)||(16415393-16415521)
chr5 (1-217)||(15084282-15084486)
chr5 (38-142)||(15337026-15337130)
chr5 (38-147)||(16410074-16410183)
chr5 (163-216)||(16415332-16415385)
chr5 (38-142)||(16399445-16399549)
chr5 (101-216)||(15444854-15444969)
chr5 (163-216)||(15336964-15337017)
chr5 (160-216)||(15332504-15332560)
[»] chr4 (1 HSPs)
chr4 (1-217)||(18688801-18689005)
[»] chr3 (1 HSPs)
chr3 (71-147)||(8188497-8188573)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15428150 - 15428366
Alignment:
Q  1 tgaacttctccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15428150 tgaacttctccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcact 15428249  T
Q  101 acaatcaaggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15428250 acaatcaaggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctatcaaggattggctacttaagcttaaagatgctg 15428349  T
Q  201 cttacgtcctcgatgat 217  Q
    |||||||||||||||||    
T  15428350 cttacgtcctcgatgat 15428366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 15358804 - 15358612
Alignment:
Q  9 tccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaa 108  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  15358804 tccttgacaatttgagctcactcgttcagaaggagattggcctatttcttggtttcgagaaagacttcaaaagtctttcaagcttgctcactacaatcaa 15358705  T
Q  109 ggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctgcttacgtc 208  Q
    |||||| |||||||||||||||||||| || |||||| |            ||||||||| ||||||||||| ||||||||||||||||||||||| |||    
T  15358704 ggctactcttgaagatgctgaggagaaacagttcactta------------caaagctatcaaggattggctgcttaagcttaaagatgctgcttatgtc 15358617  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 15332693 - 15332561
Alignment:
Q  15 acaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaaggctac 114  Q
    ||||||| ||||||||  |||||||| |||| |  |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  15332693 acaatttgaactcactaattcagaagaagctagctctatttcttggtttcgatcaagactttaaaagtctttcaagcttgctcactacaatcaaggctac 15332594  T
Q  115 gcttgaagatgctgaggagaagcaattcactga 147  Q
     ||||||||||| |||||||| |||||||||||    
T  15332593 tcttgaagatgccgaggagaaacaattcactga 15332561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 15348535 - 15348340
Alignment:
Q  9 tccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaa 108  Q
    ||||||| ||||| | | ||||| ||||||||||||||||||||||||| ||| ||||   ||| || ||||||||||| |||||||| |||||||||||    
T  15348535 tccttgataatttgagcacactcattcagaaggagcttggcctatttctaggtgtcgatcgtgaattgaaaagtctttccagcttgctaactacaatcaa 15348436  T
Q  109 ggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctgcttacgtc 208  Q
    |||||| ||||||||||||||||||||||||||| |  |            || |||||| ||||||||||| |||||||| |||||||||||| |||||    
T  15348435 ggctacacttgaagatgctgaggagaagcaattctcaaa------------cagagctatcaaggattggctgcttaagctcaaagatgctgctcacgtc 15348348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 16415521 - 16415393
Alignment:
Q  15 acaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaaggctac 114  Q
    ||||||| | ||||||| ||||||| ||| |||||||||||||||||||| || | |||||||| |||||||||||||||||| |  |||||||||||||    
T  16415521 acaatttgagctcactcattcagaaagagattggcctatttcttggtttccaacaagactttaatagtctttcaagcttgctctcatcaatcaaggctac 16415422  T
Q  115 gcttgaagatgctgaggagaagcaattca 143  Q
     |||||||||||||||||||| |||||||    
T  16415421 tcttgaagatgctgaggagaaacaattca 16415393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15084486 - 15084282
Alignment:
Q  1 tgaacttctccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcact 100  Q
    |||||||  |||||||||||| | ||||||| |||||||  |  | ||||||||||||||||| ||| | |||||||||| ||||||||| ||| | |||    
T  15084486 tgaacttgcccttgacaatttgacctcactcattcagaaaaatatcggcctatttcttggttttgaacaagactttaaaaatctttcaagtttgattact 15084387  T
Q  101 acaatcaaggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctg 200  Q
    ||||||||||| || |||||||||||||||||||| |||||||| ||            ||||||| | |||| |||| | |||||||||||||||||||    
T  15084386 acaatcaaggcaacacttgaagatgctgaggagaaacaattcaccga------------caaagctgtcaaggtttggttgcttaagcttaaagatgctg 15084299  T
Q  201 cttacgtcctcgatgat 217  Q
    |||||||||||||||||    
T  15084298 cttacgtcctcgatgat 15084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 15337130 - 15337026
Alignment:
Q  38 aaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaaggctacgcttgaagatgctgaggagaagc 137  Q
    |||||||||||||||||||| ||| ||||   ||| || ||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| |    
T  15337130 aaggagcttggcctatttctaggtgtcgatcgtgaattaaaaagtctttccagcttgctaactacaatcaaggccacacttgaagatgctgaggagaaac 15337031  T
Q  138 aattc 142  Q
    |||||    
T  15337030 aattc 15337026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 16410183 - 16410074
Alignment:
Q  38 aaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaaggctacgcttgaagatgctgaggagaagc 137  Q
    |||||||||||||||||||| ||||  ||  | || ||||| || ||  | ||| |||| || |||||||||||||| |||||||||||||||||||| |    
T  16410183 aaggagcttggcctatttctcggttctgatcaagagtttaacaggctggccagcgtgctgacaacaatcaaggctacacttgaagatgctgaggagaaac 16410084  T
Q  138 aattcactga 147  Q
    ||||||||||    
T  16410083 aattcactga 16410074  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 16415385 - 16415332
Alignment:
Q  163 agctattaaggattggctacttaagcttaaagatgctgcttacgtcctcgatga 216  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||| || |||||    
T  16415385 agctatcaaggattggctgcttaagcttaaagatactgcttacgttcttgatga 16415332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 16399549 - 16399445
Alignment:
Q  38 aaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcactacaatcaaggctacgcttgaagatgctgaggagaagc 137  Q
    |||||| || |||||||||| ||||||||  | || ||||| || ||  | |||||||| || ||||| |||||||| |||||||||||||| ||||| |    
T  16399549 aaggagattagcctatttctcggtttcgatcaagagtttaacaggctggccagcttgctgacaacaattaaggctacacttgaagatgctgaagagaaac 16399450  T
Q  138 aattc 142  Q
    |||||    
T  16399449 aattc 16399445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 15444854 - 15444969
Alignment:
Q  101 acaatcaaggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctg 200  Q
    |||||||||||||| |||||||||||||| ||| | ||||||||| |   ||  | ||| |  |||||||||| |||||| || || || ||||||||||    
T  15444854 acaatcaaggctacacttgaagatgctgaagagcaacaattcactaacaatgaacgtggtagtgctattaaggtttggctgctaaatctcaaagatgctg 15444953  T
Q  201 cttacgtcctcgatga 216  Q
    ||||| |||| |||||    
T  15444954 cttacatccttgatga 15444969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 15337017 - 15336964
Alignment:
Q  163 agctattaaggattggctacttaagcttaaagatgctgcttacgtcctcgatga 216  Q
    |||||| |||||||||||  ||||||| |||||||||||| || ||||||||||    
T  15337017 agctatcaaggattggctggttaagctcaaagatgctgctcacatcctcgatga 15336964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 15332560 - 15332504
Alignment:
Q  160 caaagctattaaggattggctacttaagcttaaagatgctgcttacgtcctcgatga 216  Q
    ||||||||| || |||||| | |||||||| |||||||||| | |||||||||||||    
T  15332560 caaagctatcaaagattggttgcttaagctcaaagatgctgttcacgtcctcgatga 15332504  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18689005 - 18688801
Alignment:
Q  1 tgaacttctccttgacaatttcaactcactcgttcagaaggagcttggcctatttcttggtttcgaaaatgactttaaaagtctttcaagcttgctcact 100  Q
    ||||||| ||||||| ||||| | |||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||| |||||||| ||||||||    
T  18689005 tgaacttgtccttgataatttgagctcactcgttcagaaggagcttggcctacttcttggttttgaaaaagacttcaaaagtttttcaagcatgctcact 18688906  T
Q  101 acaatcaaggctacgcttgaagatgctgaggagaagcaattcactgatcctgttcatggcaaagctattaaggattggctacttaagcttaaagatgctg 200  Q
    |||||||| ||||| ||||||||| |||||||||| ||||| ||| |            ||||||||| ||||||||| | |||||||||||||||||||    
T  18688905 acaatcaaagctacacttgaagatactgaggagaaacaatttactaa------------caaagctatcaaggattggttgcttaagcttaaagatgctg 18688818  T
Q  201 cttacgtcctcgatgat 217  Q
    | |||||||| ||||||    
T  18688817 cctacgtccttgatgat 18688801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 8188573 - 8188497
Alignment:
Q  71 gactttaaaagtctttcaagcttgctcactacaatcaaggctacgcttgaagatgctgaggagaagcaattcactga 147  Q
    ||||| || |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  8188573 gacttgaagagtcttgccagcttgctcacaacaatcaaggctacacttgaagatgctgaggagaaacaattcactga 8188497  T

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