View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11091_low_33 (Length: 220)
Name: NF11091_low_33
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_33 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0354 (1 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33347844 - 33347625
Alignment:
| Q |
1 |
aatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
33347844 |
aatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttacttatgtcaagcttaagagc |
33347745 |
T |
|
| Q |
101 |
aacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
33347744 |
aacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaacaaatgca |
33347645 |
T |
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| Q |
201 |
gattgactatcagaaatgca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
33347644 |
gattgactatcagaaatgca |
33347625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19111960 - 19112179
Alignment:
| Q |
1 |
aatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
19111960 |
aatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaagcttaagagc |
19112059 |
T |
|
| Q |
101 |
aacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||| |
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| T |
19112060 |
aacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccggaacaaatgca |
19112159 |
T |
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| Q |
201 |
gattgactatcagaaatgca |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19112160 |
gattgactatcagaaatgca |
19112179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26383538 - 26383757
Alignment:
| Q |
1 |
aatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagcttaagagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
26383538 |
aatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttacttatatcaagcttaagaga |
26383637 |
T |
|
| Q |
101 |
aacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaacaaatgca |
200 |
Q |
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||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
26383638 |
aacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaacaaatgca |
26383737 |
T |
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| Q |
201 |
gattgactatcagaaatgca |
220 |
Q |
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||||||||| ||||||||| |
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| T |
26383738 |
aattgactattagaaatgca |
26383757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
| Q |
67 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
166 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||| | |
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| T |
48211307 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac |
48211208 |
T |
|
| Q |
167 |
attatc |
172 |
Q |
| |
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|||||| |
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| T |
48211207 |
attatc |
48211202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
| Q |
67 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
166 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| ||||| | |
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| T |
46390140 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac |
46390239 |
T |
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| Q |
167 |
attat |
171 |
Q |
| |
|
||||| |
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| T |
46390240 |
attat |
46390244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 30 - 94
Alignment:
| Q |
156 |
gctgccatagcattatctaggacagatcgacctgcaacaaatgcagattgactatcagaaatgca |
220 |
Q |
| |
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|||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| |
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| T |
30 |
gctgccatagcattatctaggatagatcgacccggaacaaatgcaggttgacagtcagaaatgca |
94 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 11762 - 11867
Alignment:
| Q |
67 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
166 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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|
| T |
11762 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
11861 |
T |
|
| Q |
167 |
attatc |
172 |
Q |
| |
|
|||||| |
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| T |
11862 |
attatc |
11867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
| Q |
67 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
166 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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| T |
21702148 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
21702049 |
T |
|
| Q |
167 |
attatc |
172 |
Q |
| |
|
|||||| |
|
|
| T |
21702048 |
attatc |
21702043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
| Q |
56 |
ccaatcaattttgtcatacgctttacttatatccagctt |
94 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
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| T |
5613176 |
ccaatcaattctatcatacgctttacttatatccagctt |
5613214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
| Q |
55 |
tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat |
154 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| | || | ||||||||||||||||||| ||| || || ||||| |
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|
| T |
23266603 |
tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat |
23266702 |
T |
|
| Q |
155 |
ggctgccatagcattatc |
172 |
Q |
| |
|
|| |||||| ||||||| |
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|
| T |
23266703 |
agcagccataacattatc |
23266720 |
T |
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Back To:
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