View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_4 (Length: 614)
Name: NF11091_low_4
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Complemental strand, 40225137 - 40224579
Alignment:
| Q |
17 |
accatgtacatgctccattgctcccagtaacctttggatgttgtttagagagaaataaaaccattgtgcaagtaggatattagcattacacttatagtaa |
116 |
Q |
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| T |
40225137 |
accatgtacatgctccattgctcccagtaacctttggatgttgtttagagagaaataaaaccattgtgtaagtaggatattagcattacacttatagtaa |
40225038 |
T |
|
| Q |
117 |
agcttatcgatataagtattgaagatgcatcatggattgcggtaaatattttggccttgactatattctcatgttttggaaggaaatatttgagattgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40225037 |
agcttatcgatataagtattgaagatgcatcatggattgccgtaaatattttggccttgactatattctcatattttggaaggaaatatttgagattgat |
40224938 |
T |
|
| Q |
217 |
gacatgcaaggttgtcaaacgtgagagttaaagtaaactcgttttgtctaggtggagtcgacttgcaaacttgatctattaccagtttacatcatattta |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |
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| T |
40224937 |
gacatgcaaggttgtcaaacctgagagttaaagtaaactcgttttgtctaggtggagtcaacttgcaaacttgatctgttacgagtttacatcatattta |
40224838 |
T |
|
| Q |
317 |
agtaataagtttatctcgtgtttttaacaactttgatgaggggcacgatactgttcgtttgcatgatcttgtgcggataaatttagattcattttgcgtg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40224837 |
agtaataagtttatctcgtgtttttaacaactttgatgaggggcacgatactgttcgtttgcatgatcttgtgtggataaatttagattcattttgcgtg |
40224738 |
T |
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| Q |
417 |
gttcatatttttgggatagctatactttgttaggttaattatgaatttggttttagtgttctttttcttcatgtttccagccatgctttgtttgaacaca |
516 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224737 |
gttcatatttttgggacagctatactttgttaggttaattatgaatttggttttagtgttctttttcttcatgtttccagccatgctttgtttgaacaca |
40224638 |
T |
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| Q |
517 |
caacctgtgtcctcgttctgtgtatgtgtagaaattttgatgcatgaactacacttttt |
575 |
Q |
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| T |
40224637 |
caacctgtgtcctcgttctgtgtatgtgtagaaattttgatgcatgaactacacttttt |
40224579 |
T |
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