View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11091_low_5 (Length: 566)
Name: NF11091_low_5
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11091_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 32 - 556
Target Start/End: Original strand, 40051480 - 40052017
Alignment:
| Q |
32 |
atgtctaatagcattgtgaaacttgctcagtcatttggtggtctttgttcgagtcttaaattgcaatgtgaatgttgcattccctttagagggctgtgtg |
131 |
Q |
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| T |
40051480 |
atgtctaatagcattgtgaaacttgctcagtgatttggtggtcttcgttcgagtcttaaattgcaatgtgaatgttgcatgccctttagagggctgtgtg |
40051579 |
T |
|
| Q |
132 |
gtaaatttaaaaatctttatatgtcatatatttcttcaacgagaaactagtcatggttaatgttttcgtgtgattaacaaacaagtatcgaatttactta |
231 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40051580 |
gtatatttaaaaatctttatatgtcatatatttcttcaacgagaaactagtcatggttaatgttttcgtgtgattaacaaacaagtatagaatttactta |
40051679 |
T |
|
| Q |
232 |
tataccaaaccaaacatatatccatagattgatttatttatccacaataacaacattaaaaggaa----------------agaaccttgagtaattaat |
315 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40051680 |
tataccaaaccaaacatatatccattgattgatttatttatccacaataacaacattaaaaggaaataattttacaaaattagaaccttgagtaattaat |
40051779 |
T |
|
| Q |
316 |
cagagtgacagtcgtcacacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatctctgtgaatcggactag |
415 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051780 |
aagagtgaca---gtcacacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatctctgtgaatcggactag |
40051876 |
T |
|
| Q |
416 |
aaacttggttatgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagattcctccataacatgatc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051877 |
aaacttggttatgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagattcctccataacatgatc |
40051976 |
T |
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| Q |
516 |
gggttccactacttcaggaacagtctctctcctttgcttct |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
40051977 |
gggttccactacttcaggaacagtctctctcctttgtttct |
40052017 |
T |
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