View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11091_low_7 (Length: 481)

Name: NF11091_low_7
Description: NF11091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11091_low_7
NF11091_low_7
[»] chr1 (3 HSPs)
chr1 (2-121)||(2334929-2335048)
chr1 (204-278)||(2335131-2335205)
chr1 (390-439)||(13186321-13186370)
[»] scaffold0770 (2 HSPs)
scaffold0770 (337-466)||(1497-1626)
scaffold0770 (213-266)||(1760-1812)
[»] scaffold0029 (4 HSPs)
scaffold0029 (337-466)||(99801-99930)
scaffold0029 (213-282)||(21049-21116)
scaffold0029 (213-282)||(34790-34857)
scaffold0029 (213-266)||(100064-100116)
[»] chr4 (4 HSPs)
chr4 (333-466)||(15879416-15879549)
chr4 (204-330)||(15567000-15567129)
chr4 (204-330)||(15579645-15579774)
chr4 (214-269)||(18216542-18216597)
[»] chr5 (14 HSPs)
chr5 (2-121)||(20371693-20371812)
chr5 (2-121)||(20397417-20397536)
chr5 (204-282)||(7254197-7254273)
chr5 (204-282)||(7261639-7261715)
chr5 (214-270)||(26552351-26552407)
chr5 (214-330)||(29885459-29885577)
chr5 (213-272)||(36370318-36370377)
chr5 (213-272)||(36994981-36995040)
chr5 (213-272)||(37008919-37008978)
chr5 (213-270)||(25449672-25449729)
chr5 (214-330)||(29902035-29902153)
chr5 (214-270)||(23576589-23576645)
chr5 (228-272)||(36384261-36384305)
chr5 (213-270)||(25676874-25676931)
[»] chr2 (7 HSPs)
chr2 (2-121)||(35039010-35039129)
chr2 (2-123)||(21069241-21069364)
chr2 (213-270)||(39650514-39650571)
chr2 (201-268)||(21069126-21069193)
chr2 (215-270)||(22935160-22935215)
chr2 (215-270)||(22941124-22941179)
chr2 (215-270)||(22955019-22955074)
[»] chr6 (6 HSPs)
chr6 (2-116)||(15390396-15390510)
chr6 (204-330)||(15665416-15665546)
chr6 (213-272)||(16324643-16324702)
chr6 (213-270)||(18964629-18964686)
chr6 (390-454)||(18437332-18437396)
chr6 (213-270)||(20531761-20531819)
[»] chr3 (15 HSPs)
chr3 (2-123)||(15910159-15910280)
chr3 (2-123)||(15924402-15924523)
chr3 (213-278)||(21608292-21608357)
chr3 (213-278)||(21616920-21616985)
chr3 (213-330)||(19834215-19834335)
chr3 (213-272)||(46372128-46372187)
chr3 (213-272)||(46386255-46386314)
chr3 (213-270)||(15528075-15528132)
chr3 (214-270)||(46392468-46392524)
chr3 (214-270)||(46400216-46400272)
chr3 (213-270)||(15536764-15536821)
chr3 (213-269)||(5650848-5650904)
chr3 (390-454)||(14252925-14252989)
chr3 (213-268)||(15924257-15924312)
chr3 (213-270)||(15609565-15609622)
[»] scaffold0503 (2 HSPs)
scaffold0503 (333-432)||(1256-1355)
scaffold0503 (333-432)||(5823-5922)
[»] scaffold0484 (2 HSPs)
scaffold0484 (2-121)||(10483-10602)
scaffold0484 (201-330)||(10685-10816)
[»] scaffold0094 (2 HSPs)
scaffold0094 (2-123)||(29584-29705)
scaffold0094 (213-268)||(29795-29850)
[»] chr8 (2 HSPs)
chr8 (333-466)||(24487277-24487410)
chr8 (209-278)||(15708054-15708123)
[»] scaffold0014 (1 HSPs)
scaffold0014 (205-330)||(4557-4685)
[»] scaffold0077 (1 HSPs)
scaffold0077 (333-421)||(315-403)
[»] scaffold0755 (1 HSPs)
scaffold0755 (213-278)||(1794-1859)
[»] chr7 (12 HSPs)
chr7 (213-270)||(15684594-15684651)
chr7 (213-278)||(42630345-42630410)
chr7 (213-278)||(8810913-8810978)
chr7 (213-278)||(8818727-8818792)
chr7 (213-278)||(9461436-9461501)
chr7 (213-278)||(9475194-9475259)
chr7 (213-278)||(16387566-16387631)
chr7 (213-278)||(16401693-16401758)
chr7 (333-388)||(42017132-42017187)
chr7 (213-278)||(30364113-30364178)
chr7 (213-278)||(30378178-30378243)
chr7 (292-330)||(36899197-36899235)
[»] scaffold0067 (1 HSPs)
scaffold0067 (213-278)||(43672-43737)
[»] scaffold1575 (1 HSPs)
scaffold1575 (204-270)||(917-984)
[»] scaffold0815 (1 HSPs)
scaffold0815 (214-268)||(4215-4269)
[»] scaffold1271 (1 HSPs)
scaffold1271 (214-270)||(1019-1075)
[»] scaffold0269 (1 HSPs)
scaffold0269 (217-270)||(13731-13784)
[»] scaffold0182 (1 HSPs)
scaffold0182 (214-282)||(6156-6222)
[»] scaffold0435 (1 HSPs)
scaffold0435 (214-270)||(7563-7619)
[»] scaffold0034 (1 HSPs)
scaffold0034 (214-270)||(118645-118701)
[»] scaffold1855 (1 HSPs)
scaffold1855 (214-282)||(261-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (213-270)||(3809-3866)
[»] scaffold0101 (2 HSPs)
scaffold0101 (333-388)||(15923-15976)
scaffold0101 (213-249)||(15735-15771)
[»] scaffold1761 (1 HSPs)
scaffold1761 (214-269)||(574-629)
[»] scaffold0422 (1 HSPs)
scaffold0422 (214-266)||(5671-5723)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 2334929 - 2335048
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||    
T  2334929 gaggagcagcatagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta 2335028  T
Q  102 tatataggctgtagttcaca 121  Q
    ||||||||||||||||||||    
T  2335029 tatataggctgtagttcaca 2335048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 2335131 - 2335205
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  2335131 ggaagggatggggttccggcggcggttggccggccagtgtggcggcaccaccgcgccggaaccctaccaacttat 2335205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 13186370 - 13186321
Alignment:
Q  390 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctt 439  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  13186370 gttgtggttggtgacggttctgtgatgtgtccggtttggaagtgcggctt 13186321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 1626 - 1497
Alignment:
Q  337 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 436  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  1626 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 1527  T
Q  437 ctttgagttaatgttgtttcttagtgatgt 466  Q
    |||  |||| |||||||| |||||||||||    
T  1526 cttcaagttgatgttgttccttagtgatgt 1497  T

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Target: scaffold0770; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 1812 - 1760
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 266  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
T  1812 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 1760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 99930 - 99801
Alignment:
Q  337 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 436  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  99930 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 99831  T
Q  437 ctttgagttaatgttgtttcttagtgatgt 466  Q
    |||  |||| |||||||| |||||||||||    
T  99830 cttcaagttgatgttgttccttagtgatgt 99801  T

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Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 21116 - 21049
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  21116 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 21049  T

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Target: scaffold0029; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 34857 - 34790
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  34857 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 34790  T

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Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 100116 - 100064
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 266  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
T  100116 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 100064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 333 - 466
Target Start/End: Original strand, 15879416 - 15879549
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 432  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||    
T  15879416 acctttggatgaacccggttgtttgctgttgtttgtgacgacaacgaatgtgttgtagttgtggttggtgacgactctgtgatgtgtccggtttggaagt 15879515  T
Q  433 gcggctttgagttaatgttgtttcttagtgatgt 466  Q
    ||||||| ||||| |||||||| |||||||||||    
T  15879516 gcggcttcgagttgatgttgttccttagtgatgt 15879549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 15567000 - 15567129
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttc 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |        |||||||||    
T  15567000 ggaaaggatggggtttcggcggcagttggccggccagtgtggcggcaccaccgcgccggaaccctaacaacttatttttttgatttttttcggttccttc 15567099  T
Q  301 tacttgttcttttctcctctactcgattct 330  Q
    ||||||||||||||||||||||||||||||    
T  15567100 tacttgttcttttctcctctactcgattct 15567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 15579645 - 15579774
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttc 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||   |        |||||||||    
T  15579645 ggaaaggatggggttccggcggcagttggtcggccagtgcggcggcaccatcgcgccggaaccctaacaacttatttttttgattttttttggttccttc 15579744  T
Q  301 tacttgttcttttctcctctactcgattct 330  Q
    ||||||||||||||||||||||||||||||    
T  15579745 tacttgttcttttctcctctactcgattct 15579774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 18216597 - 18216542
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 269  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||    
T  18216597 gggttccggcggcggttggtcggccggtgcggcgacaccaccgtgccggaacccta 18216542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 20371693 - 20371812
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||| |||    
T  20371693 gaggagcaacatagaccacaggatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggcta 20371792  T
Q  102 tatataggctgtagttcaca 121  Q
    ||||||||||||||||||||    
T  20371793 tatataggctgtagttcaca 20371812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 20397417 - 20397536
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||| |||    
T  20397417 gaggagcaacatagaccacaggatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgcgtatgggatcaaagagggcta 20397516  T
Q  102 tatataggctgtagttcaca 121  Q
    ||||||||||||||||||||    
T  20397517 tatataggctgtagttcaca 20397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 7254197 - 7254273
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  7254197 ggaaaggatggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7254273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 7261639 - 7261715
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  7261639 ggaaaggatggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7261715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 26552351 - 26552407
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  26552351 gggttccggcggcggttggccggccggtgcggcggcaccaccgcgccggaaccctaa 26552407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 29885577 - 29885459
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta--tatttannnnnnnnggttccttctacttgttctt 311  Q
    ||||||||| ||| ||||||| ||| ||| |||||| |||||||||||||||||||||||||||  | |||         |||||||||||||||||||     
T  29885577 gggttccggtggcggttggccagcctgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29885478  T
Q  312 ttctcctctactcgattct 330  Q
    |||||||||||||||||||    
T  29885477 ttctcctctactcgattct 29885459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 36370318 - 36370377
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  36370318 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 36370377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 36994981 - 36995040
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
T  36994981 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 36995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 37008919 - 37008978
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
T  37008919 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 37008978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 25449672 - 25449729
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  25449672 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 25449729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 29902153 - 29902035
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatttannnnnnnn--ggttccttctacttgttctt 311  Q
    ||||||||| ||| ||||||  ||  ||| |||||| |||||||||||||||||||||||||||| |||           |||||||||||||||||||     
T  29902153 gggttccggtggcggttggctagcttgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29902054  T
Q  312 ttctcctctactcgattct 330  Q
    |||||||||||||||||||    
T  29902053 ttctcctctactcgattct 29902035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 23576589 - 23576645
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  23576589 gggttccggcagcggttggccgaccggtacggcggcaccaccgcgccggaaccctaa 23576645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 36384261 - 36384305
Alignment:
Q  228 gttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  36384261 gttggacggccagttcggcggcgccaccgcgccggaaccctaaca 36384305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 25676874 - 25676931
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||| | | | ||||||||| || |||||||||| |||||||||||||||||    
T  25676874 ggggttccggtgacggctggccggccggtacggcggcacctccgcgccggaaccctaa 25676931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 35039129 - 35039010
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||| |||    
T  35039129 gaggagcaacatagaccacaggatcaaagattcaaagaacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgagatcaaagaggccta 35039030  T
Q  102 tatataggctgtagttcaca 121  Q
    ||||||||||||||||||||    
T  35039029 tatataggctgtagttcaca 35039010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 21069364 - 21069241
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaag--aatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggac 99  Q
    |||||||| || ||||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||| | || || |||||||||| |||| |    
T  21069364 gaggagcaacatagaccacaggatcaaaacaaatcaaaggacaagggtgcgtgggtgcatggtaaggtcgtacacctacacgcatgggatcaaagaggcc 21069265  T
Q  100 tatatataggctgtagttcacaga 123  Q
    ||||||||||||||||||||||||    
T  21069264 tatatataggctgtagttcacaga 21069241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 39650571 - 39650514
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  39650571 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 39650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 21069193 - 21069126
Alignment:
Q  201 gatggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 268  Q
    ||||||| |||||||||||||||||| ||||||||  | || ||||||| ||||||||||||||||||    
T  21069193 gatggaagggatggggttccggcggcggttggccgatcggtacggcggcgccaccgcgccggaaccct 21069126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 22935215 - 22935160
Alignment:
Q  215 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22935215 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22935160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 22941179 - 22941124
Alignment:
Q  215 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22941179 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22941124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 22955074 - 22955019
Alignment:
Q  215 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22955074 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22955019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 15390396 - 15390510
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||    
T  15390396 gaggagcaacatagatcacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta 15390495  T
Q  102 tatataggctgtagt 116  Q
    |||||||||||||||    
T  15390496 tatataggctgtagt 15390510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 15665416 - 15665546
Alignment:
Q  204 ggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatt----tannnnnnnnggttcctt 299  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||    |         ||||||||    
T  15665416 ggaaaggatggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttattttttgattttttttttggttcctt 15665515  T
Q  300 ctacttgttcttttctcctctactcgattct 330  Q
    |||||||||||||||||||||||||||||||    
T  15665516 ctacttgttcttttctcctctactcgattct 15665546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 16324643 - 16324702
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  16324643 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 16324702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 18964629 - 18964686
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  18964629 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 18964686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 18437396 - 18437332
Alignment:
Q  390 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 454  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| ||||||||| ||||| ||||||||    
T  18437396 gttgtggttggtgacggttatgtgatgtgtccggtttggacgtgcggcttcgagttgatgttgtt 18437332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 20531761 - 20531819
Alignment:
Q  213 ggggttccggcggcagttggccgg-ccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||  ||||||||| || ||||| ||||||| |||||||||||||||||    
T  20531761 ggggttccggcggtggttggccgggccggtgcgacggcacctccgcgccggaaccctaa 20531819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 15910280 - 15910159
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || ||||||||||||||||| |||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||||||||| |||| |||    
T  15910280 gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatgcatggcaaggccgtacacccacgcgtatgggatcaaagaggccta 15910181  T
Q  102 tatataggctgtagttcacaga 123  Q
    ||||||||||||||||||||||    
T  15910180 tatataggctgtagttcacaga 15910159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 15924523 - 15924402
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || ||||||||||||||||| |||||||||| ||||||||||| | ||||| |||| |||||| |||||||||||||||||| |||| |||    
T  15924523 gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggccta 15924424  T
Q  102 tatataggctgtagttcacaga 123  Q
    ||||||||||||||||||||||    
T  15924423 tatataggctgtagttcacaga 15924402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 21608357 - 21608292
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21608357 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21608292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 21616985 - 21616920
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21616985 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 19834335 - 19834215
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttctacttgttc 309  Q
    |||||||||||||| | ||||||||| ||| |||||| |||||| ||||||||||||||||||||   | |||         ||||||||||||||||||    
T  19834335 ggggttccggcggcggctggccggccggtgaggcggcgccaccgtgccggaaccctaacaacttattttttttggtttttttggttccttctacttgttc 19834236  T
Q  310 ttttctcctctactcgattct 330  Q
    |||||||||||||||||||||    
T  19834235 ttttctcctctactcgattct 19834215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 46372187 - 46372128
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  46372187 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46372128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 46386314 - 46386255
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 272  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  46386314 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46386255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 15528075 - 15528132
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  15528075 ggggttccggcggcagttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15528132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 46392468 - 46392524
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  46392468 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 46400216 - 46400272
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  46400216 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46400272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 15536764 - 15536821
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||    
T  15536764 ggggttccggcggcggttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15536821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 5650848 - 5650904
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 269  Q
    |||||||||||||| | ||||||||| |||||||||| | |||||||||||||||||    
T  5650848 ggggttccggcggcggctggccggccggtgcggcggcgctaccgcgccggaacccta 5650904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 14252989 - 14252925
Alignment:
Q  390 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 454  Q
    ||||||||||| ||| |||||||| ||||||| |||||||||||||| || ||||| ||||||||    
T  14252989 gttgtggttggtgacagttctgtgatgtgtccggtttggaagtgcggattcgagttgatgttgtt 14252925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 15924312 - 15924257
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 268  Q
    |||||||||||||| | ||||||||| |||||||||| |||||| |||||||||||    
T  15924312 ggggttccggcggcggctggccggccggtgcggcggcgccaccgtgccggaaccct 15924257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 15609565 - 15609622
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||| ||| | ||||||||| |||||||||| |||||| |||||||||||||    
T  15609565 ggggttccggtggcggctggccggccggtgcggcggcgccaccgtgccggaaccctaa 15609622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 1256 - 1355
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  1256 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 1355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 5823 - 5922
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  5823 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 5922  T

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Target: scaffold0484 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 10483 - 10602
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||| |||    
T  10483 gaggagcaacatagaccacaagatcaaagattcaaaggacaagggtgcatgggtgcatggtaaggccgtacacccacgcgtatgggatcaaagaggccta 10582  T
Q  102 tatataggctgtagttcaca 121  Q
    |||||||| |||||||||||    
T  10583 tatataggttgtagttcaca 10602  T

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Target: scaffold0484; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 10685 - 10816
Alignment:
Q  201 gatggaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt--annnnnnnnggttcct 298  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||  |        ||||| |    
T  10685 gatggaaaggatggggttccggcggcggttggcctgccagtgcggcggcaccaccgcgccggaaccctaacaacttattttttaaatttttttggttctt 10784  T
Q  299 tctacttgttcttttctcctctactcgattct 330  Q
    |||||||||||||| ||||| |||||||||||    
T  10785 tctacttgttctttcctcctatactcgattct 10816  T

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Target: scaffold0094 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 29584 - 29705
Alignment:
Q  2 gaggagcagcacagaccacaggatcaaagaatcaaaggacaagggtgcgtgggtgcatggtaaggacgtacaaccacgcgtatgggatcaaggaggacta 101  Q
    |||||||| || ||||||||||||||||| |||||||||| ||||||||||| | ||||| |||| |||||| |||||||||||||||||| |||| |||    
T  29584 gaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggccgtacacccacgcgtatgggatcaaagaggccta 29683  T
Q  102 tatataggctgtagttcacaga 123  Q
    ||||||||||||||||||||||    
T  29684 tatataggctgtagttcacaga 29705  T

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Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 29795 - 29850
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 268  Q
    |||||||||||||| | ||||||||| |||||||||| || ||| |||||||||||    
T  29795 ggggttccggcggcggctggccggccggtgcggcggcgccgccgtgccggaaccct 29850  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 333 - 466
Target Start/End: Original strand, 24487277 - 24487410
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 432  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||| ||||||  ||||||| ||    
T  24487277 acctttggatgaacccggttgtttgttgttgtttgtgacggcaacggatgtgttgtggttgtggttggtgacggttctgtgatgtgtctggtttggaggt 24487376  T
Q  433 gcggctttgagttaatgttgtttcttagtgatgt 466  Q
    || |||| ||||| |||||||| ||||| |||||    
T  24487377 gcagcttcgagttgatgttgttccttagggatgt 24487410  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 15708123 - 15708054
Alignment:
Q  209 ggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  15708123 ggatggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 15708054  T

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Target: scaffold0014 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 4685 - 4557
Alignment:
Q  205 gaaaggatggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttct 301  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   | |||         ||||||||||    
T  4685 gaaaggatggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttatttttttttttttttttggttccttct 4586  T
Q  302 acttgttcttttctcctctactcgattct 330  Q
    |||||||||||||||||||||||||||||    
T  4585 acttgttcttttctcctctactcgattct 4557  T

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Target: scaffold0077 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 403 - 315
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtcc 421  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  403 acctttggatgaacttggttgtttgctgttgtttgtgacggcaacagatgtgttgtagttgtggttggtgacggctctgtgatgtgtcc 315  T

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Target: scaffold0755 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 1859 - 1794
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1859 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 1794  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 15684651 - 15684594
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15684651 ggggttccggcggcggttggccggccagtgcggcggcaccaccgcgccggaaccctaa 15684594  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 42630345 - 42630410
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42630345 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 42630410  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 8810978 - 8810913
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  8810978 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8810913  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 8818792 - 8818727
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  8818792 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8818727  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 9461501 - 9461436
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  9461501 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9461436  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 9475259 - 9475194
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  9475259 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9475194  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 16387566 - 16387631
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  16387566 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16387631  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 16401693 - 16401758
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  16401693 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16401758  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 42017132 - 42017187
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 388  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  42017132 acctttggatgaacccggttgcttgctgttgtttgtgacggcaacagatgtgttgt 42017187  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 30364113 - 30364178
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  30364113 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30364178  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 30378178 - 30378243
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  30378178 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30378243  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 36899235 - 36899197
Alignment:
Q  292 ggttccttctacttgttcttttctcctctactcgattct 330  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  36899235 ggttctttctacttgttctcttctcctctactcgattct 36899197  T

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Target: scaffold0067 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 43672 - 43737
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 278  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  43672 ggggttccggcggcggttggccggccggtgcggcggcaccaccgcgtcggaaccctatcaatttat 43737  T

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Target: scaffold1575 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 984 - 917
Alignment:
Q  204 ggaaaggatgggg-ttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  984 ggaaaggatgggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 917  T

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Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 4215 - 4269
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 268  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  4215 gggttccggcggcggttggccggccggtgcggcggcgccaccgcgccggaaccct 4269  T

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Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 1019 - 1075
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||    
T  1019 gggttccggcggaggttggccggccggtgcggcggcaccaccgtgccggaaccctaa 1075  T

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Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 13731 - 13784
Alignment:
Q  217 ttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  13731 ttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 13784  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 6222 - 6156
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    ||||||||||||| ||||||||||| |||||||||| |||||| ||| ||||||||  |||||||||||    
T  6222 gggttccggcggcggttggccggccggtgcggcggcgccaccgtgccagaacccta--aacttatattt 6156  T

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Target: scaffold0435 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 7563 - 7619
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    ||||||||||||| |||||||| || || ||||||||||||| ||||||||||||||    
T  7563 gggttccggcggcggttggccgaccggtacggcggcaccaccacgccggaaccctaa 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 118645 - 118701
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||| | |||| ||||||||||| || ||||||||||||||||||||||||||||    
T  118645 gggttctgacggcggttggccggccggtacggcggcaccaccgcgccggaaccctaa 118701  T

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Target: scaffold1855 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 327 - 261
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 282  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||||||||| ||  |||||||||||    
T  327 gggttccggcgacggttggccggccggtgcggcggcgccaccgtgccggaacctta--aacttatattt 261  T

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Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 3809 - 3866
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 270  Q
    |||||||||| ||| | ||||||||| || |||||||||| |||||||||||||||||    
T  3809 ggggttccggtggcggctggccggccggtacggcggcacctccgcgccggaaccctaa 3866  T

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Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 15923 - 15976
Alignment:
Q  333 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 388  Q
    |||||||||||||||||||||  |||||||||||| |||||| || ||||||||||    
T  15923 acctttggatgaacccggttg--tgctgttgtttgtgacggccacggatgtgttgt 15976  T

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Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 15735 - 15771
Alignment:
Q  213 ggggttccggcggcagttggccggccagtgcggcggc 249  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  15735 ggggttccggcggcggttggccggccggtgcggcggc 15771  T

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Target: scaffold1761 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 574 - 629
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 269  Q
    ||||||||||||  |||||||| || |||||||||| |||||||| ||||||||||    
T  574 gggttccggcggtggttggccgaccggtgcggcggcgccaccgcgtcggaacccta 629  T

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Target: scaffold0422 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 5671 - 5723
Alignment:
Q  214 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 266  Q
    |||||| |||||| ||||||||||| |||| |||||||| ||||| |||||||    
T  5671 gggttctggcggcggttggccggccggtgcagcggcaccgccgcgtcggaacc 5723  T

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