View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_12 (Length: 406)
Name: NF11092_high_12
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 393
Target Start/End: Original strand, 35754228 - 35754624
Alignment:
| Q |
6 |
agtagcagagatattatatgcatgtatgaaaatattaatcatttttcctcaactcaaatttagcaaaagtcaattttacacaactatccaaacataaatt |
105 |
Q |
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| T |
35754228 |
agtagcatagatattatatgcatgtatgaaaatattaatcatttttcctcaactcaaatttaccaaaagtcaattttacacaactatccaaacataaatt |
35754327 |
T |
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| Q |
106 |
gatnnnnnnnnnnnnnnnnnn---ttcatgaatgtacgtgtccgtaaa----agtgtttgcttgatatcgcgttaagtttggtaaaattacaatgagtct |
198 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||| |
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| T |
35754328 |
gataaaaataaaataaaataaaaattcatgaatgtacgtgtccgtaaatacaagtgtttgcttgatatcgcgttaagtttggcaaaatcacaatgaatct |
35754427 |
T |
|
| Q |
199 |
atgattttacaatagctacaatttgtagctttgacaaaatcattgtgccaccatgaatttgttcaagccaccattatatcaaacttgtactaaaattgta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |
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| T |
35754428 |
atgattttacaatagctacaatttgtagctttgacaaaattattgtgccaccatgattttgttcaagccaccattatatcaaatatgcactaaaattgta |
35754527 |
T |
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| Q |
299 |
a--cnnnnnnnnntgcactaaatcaatttacgctcaacttgctttcaatcaaaaatacgtttaataaaattgattacgaaccatagcttcaaattag |
393 |
Q |
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| T |
35754528 |
aacaaaaaaaaaatgcactaaatcaatttacgctcaacttgctttcaatcaaaaatacgtttaataaaattgattacgaaccatagcttcaaattag |
35754624 |
T |
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