View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_high_13 (Length: 404)

Name: NF11092_high_13
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_high_13
NF11092_high_13
[»] chr2 (4 HSPs)
chr2 (1-395)||(38251600-38251995)
chr2 (1-395)||(43157547-43157942)
chr2 (1-76)||(38251996-38252072)
chr2 (1-76)||(43157470-43157546)
[»] chr1 (5 HSPs)
chr1 (1-395)||(11474971-11475366)
chr1 (1-395)||(11503011-11503406)
chr1 (1-76)||(11474894-11474970)
chr1 (1-76)||(11502934-11503010)
chr1 (1-42)||(28245195-28245236)
[»] chr7 (2 HSPs)
chr7 (1-42)||(22490436-22490477)
chr7 (356-395)||(27962394-27962433)
[»] chr6 (3 HSPs)
chr6 (1-42)||(10123422-10123463)
chr6 (1-42)||(19306850-19306891)
chr6 (53-109)||(18330745-18330801)
[»] chr5 (1 HSPs)
chr5 (1-42)||(25382949-25382990)
[»] chr3 (2 HSPs)
chr3 (355-395)||(49233770-49233810)
chr3 (355-395)||(49234341-49234381)
[»] chr8 (1 HSPs)
chr8 (356-395)||(14839257-14839296)
[»] chr4 (1 HSPs)
chr4 (1-42)||(48795528-48795569)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 38251995 - 38251600
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251995 aattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 38251896  T
Q  101 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  38251895 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcata 38251796  T
Q  200 cttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251795 cttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 38251696  T
Q  300 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251695 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 38251600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 43157547 - 43157942
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157547 aattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 43157646  T
Q  101 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  43157647 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcata 43157746  T
Q  200 cttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157747 cttcaatgctggttcaaggtaattttctgtatatctcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 43157846  T
Q  300 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157847 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 43157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38252072 - 38251996
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 76  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38252072 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 38251996  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43157470 - 43157546
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 76  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43157470 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 43157546  T

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Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 11474971 - 11475366
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474971 aattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 11475070  T
Q  101 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcata 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||    
T  11475071 gttaactctactggattgtagcctgttgaacttgactgtctgcctataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcata 11475170  T
Q  200 cttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475171 cttcaatgctggttcaaggtaattttctgtatatatcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 11475270  T
Q  300 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475271 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 11475366  T

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Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 11503011 - 11503406
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503011 aattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgt 11503110  T
Q  101 gttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcata 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||    
T  11503111 gttaactctactggattgtagcctgttgaacttgactgtctgccaataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcata 11503210  T
Q  200 cttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 299  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503211 cttcaatgctggttcaaggtaattttctgtatatatcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgt 11503310  T
Q  300 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503311 ggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 11503406  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11474894 - 11474970
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 76  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11474894 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11474970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11502934 - 11503010
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 76  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11502934 aattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11503010  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28245236 - 28245195
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  28245236 aattgtgttatagcagcctctgtcatttgtttgtttctattt 28245195  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22490477 - 22490436
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  22490477 aattgtgttatagcagcctctgtcatttgttcgtttgtattt 22490436  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 27962433 - 27962394
Alignment:
Q  356 tgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  27962433 tgtgttccagctgcaacatatcggttttattttcttctct 27962394  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10123463 - 10123422
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  10123463 aattgtgttatagcagcctctatcatttgttcgtttctattt 10123422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19306891 - 19306850
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  19306891 aattgtgttatagcagcctctatcatttgttcgtttctattt 19306850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 18330801 - 18330745
Alignment:
Q  53 attttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactct 109  Q
    ||||||| ||||| ||||||| ||||| |||||||||||  ||||||| ||||||||    
T  18330801 attttagtgtgtgcaacaaatgttgatgcttttgtttttttattgtgttttaactct 18330745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25382949 - 25382990
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  25382949 aattgtgttatagcagcctctgtcatttgttcgattctattt 25382990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 49233810 - 49233770
Alignment:
Q  355 ttgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  49233810 ttgtgttccagctgcaacatattggttttaatttcttctct 49233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 49234381 - 49234341
Alignment:
Q  355 ttgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  49234381 ttgtgttccagctgcaacatattggttttaatttcttctct 49234341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 14839257 - 14839296
Alignment:
Q  356 tgtgttccagctgcaacatattggttttgttttcttctct 395  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  14839257 tgtgttccagctgcaacatatcggttttattttcttctct 14839296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48795528 - 48795569
Alignment:
Q  1 aattgtgttatagtagcctctgtcatttgttcgtttctattt 42  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  48795528 aattgtgttataacaacctctgtcatttgttcgtttctattt 48795569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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