View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_18 (Length: 355)
Name: NF11092_high_18
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 15626127 - 15625914
Alignment:
| Q |
20 |
taacttcccattgtttttgttccatctatgttnnnnnnnctccact---gtagtgagaactgagaagtataaactacaagaagcaaaacaaaatgatact |
116 |
Q |
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| T |
15626127 |
taacttcccattgtttttgttccatctatgttaaaaaaactccactgtagtagtgagaactgagaagtataaactacaagaagcaaaacaaaatgatact |
15626028 |
T |
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| Q |
117 |
tattcaaacgcctaaagaaataatgttaaaacagcatagctgactcttaaataatgggattagttcattaaaaagttacatgcatggaactcctgttagg |
216 |
Q |
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| T |
15626027 |
tattcaaacgcctcaagaaataatgttaaaacagcatagttgactcttaaataatgggattagttcattaaaaagtta----catggaactcctgttagg |
15625932 |
T |
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| Q |
217 |
ctacaacatcaatcaagg |
234 |
Q |
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|||||||||||||||||| |
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| T |
15625931 |
ctacaacatcaatcaagg |
15625914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 15625764 - 15625644
Alignment:
| Q |
233 |
ggctaggattctttggctctccnnnnnnncgctcaagcacatagtaccaactaagcgtctttggctctccattttcactcgagcacatagtgccgactat |
332 |
Q |
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| T |
15625764 |
ggctaggagtctttggctctcctttttttcgctcaagcacatagtaccaactaagagtctttggctctccattttcactcgagcacatagtgccaactat |
15625665 |
T |
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| Q |
333 |
ataggagtctctgcttctcca |
353 |
Q |
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| T |
15625664 |
ataggagtctttggttctcca |
15625644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 15625658 - 15625623
Alignment:
| Q |
289 |
gtctttggctctccattttcactcgagcacatagtg |
324 |
Q |
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| T |
15625658 |
gtctttggttctccattttcactcgagcacatagtg |
15625623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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