View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_high_26 (Length: 322)

Name: NF11092_high_26
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_high_26
NF11092_high_26
[»] chr1 (38 HSPs)
chr1 (1-236)||(644536-644771)
chr1 (1-71)||(46903481-46903551)
chr1 (1-71)||(43757599-43757669)
chr1 (1-74)||(40139123-40139196)
chr1 (1-64)||(37741942-37742005)
chr1 (1-71)||(27687509-27687579)
chr1 (11-73)||(41507194-41507256)
chr1 (9-75)||(48872026-48872092)
chr1 (1-71)||(49589964-49590034)
chr1 (1-82)||(5477153-5477234)
chr1 (1-70)||(50460702-50460771)
chr1 (8-71)||(42539418-42539481)
chr1 (7-73)||(16836111-16836177)
chr1 (1-71)||(40596044-40596114)
chr1 (1-71)||(48325768-48325838)
chr1 (1-71)||(49453491-49453561)
chr1 (3-71)||(19427521-19427589)
chr1 (5-77)||(30414869-30414941)
chr1 (92-144)||(35752138-35752190)
chr1 (14-73)||(16252762-16252821)
chr1 (4-71)||(21446211-21446278)
chr1 (2-74)||(30596720-30596794)
chr1 (1-72)||(35030752-35030823)
chr1 (1-64)||(41558011-41558074)
chr1 (1-71)||(11121492-11121562)
chr1 (1-71)||(45272150-45272220)
chr1 (1-38)||(2827700-2827737)
chr1 (1-38)||(11897218-11897255)
chr1 (34-75)||(23400023-23400064)
chr1 (1-38)||(27787533-27787570)
chr1 (7-71)||(36954671-36954733)
chr1 (94-139)||(45925104-45925149)
chr1 (1-38)||(47113318-47113355)
chr1 (7-75)||(51718622-51718691)
chr1 (7-71)||(14983784-14983848)
chr1 (5-73)||(31433500-31433568)
chr1 (7-71)||(33358154-33358218)
chr1 (34-74)||(37669395-37669435)
[»] chr8 (27 HSPs)
chr8 (1-71)||(45405809-45405879)
chr8 (1-71)||(25430657-25430727)
chr8 (1-73)||(32777894-32777966)
chr8 (3-71)||(38939181-38939249)
chr8 (1-72)||(6243044-6243115)
chr8 (1-72)||(36675335-36675406)
chr8 (1-71)||(7325726-7325796)
chr8 (1-71)||(13924022-13924092)
chr8 (34-78)||(29509259-29509303)
chr8 (1-72)||(23265344-23265415)
chr8 (45-80)||(42786705-42786740)
chr8 (1-71)||(14233634-14233704)
chr8 (1-71)||(37471654-37471724)
chr8 (7-64)||(157074-157131)
chr8 (7-76)||(5740781-5740850)
chr8 (1-38)||(12490762-12490799)
chr8 (3-64)||(14710885-14710946)
chr8 (1-38)||(24946046-24946083)
chr8 (1-38)||(32674222-32674259)
chr8 (14-71)||(37392131-37392188)
chr8 (1-73)||(38174223-38174296)
chr8 (14-74)||(1370288-1370348)
chr8 (16-72)||(1796495-1796551)
chr8 (90-126)||(13772406-13772442)
chr8 (92-132)||(23848267-23848307)
chr8 (9-77)||(30439503-30439571)
chr8 (44-76)||(43873735-43873767)
[»] chr4 (28 HSPs)
chr4 (1-71)||(9827973-9828043)
chr4 (1-71)||(37731926-37731996)
chr4 (3-71)||(46686245-46686312)
chr4 (90-145)||(52375011-52375066)
chr4 (5-71)||(1868887-1868953)
chr4 (1-74)||(7795022-7795095)
chr4 (3-74)||(28899207-28899278)
chr4 (17-71)||(37022272-37022326)
chr4 (1-38)||(1987703-1987740)
chr4 (16-73)||(24310526-24310583)
chr4 (7-71)||(42490920-42490984)
chr4 (9-76)||(33093113-33093180)
chr4 (1-72)||(39241291-39241362)
chr4 (1-71)||(4511825-4511895)
chr4 (1-71)||(27384187-27384257)
chr4 (11-73)||(32365667-32365729)
chr4 (1-38)||(1031799-1031836)
chr4 (3-72)||(8848710-8848779)
chr4 (1-38)||(12241102-12241139)
chr4 (1-70)||(28676142-28676211)
chr4 (44-77)||(30042128-30042161)
chr4 (1-38)||(33820326-33820363)
chr4 (1-38)||(34537974-34538011)
chr4 (34-71)||(35037609-35037646)
chr4 (1-70)||(54848150-54848219)
chr4 (7-71)||(2109443-2109507)
chr4 (87-135)||(2247580-2247628)
chr4 (1-73)||(52851338-52851410)
[»] chr2 (25 HSPs)
chr2 (3-73)||(24727424-24727494)
chr2 (1-71)||(38724308-38724378)
chr2 (1-71)||(27329099-27329169)
chr2 (8-72)||(7121389-7121453)
chr2 (1-72)||(8757554-8757625)
chr2 (90-145)||(42251257-42251312)
chr2 (1-72)||(45202122-45202193)
chr2 (1-71)||(22353165-22353235)
chr2 (1-74)||(27538906-27538979)
chr2 (90-135)||(41496059-41496104)
chr2 (9-73)||(35792637-35792701)
chr2 (1-76)||(6885470-6885545)
chr2 (1-76)||(43725211-43725286)
chr2 (1-71)||(285459-285529)
chr2 (1-71)||(22296119-22296189)
chr2 (90-132)||(45300461-45300503)
chr2 (1-38)||(13850174-13850211)
chr2 (1-38)||(20247857-20247894)
chr2 (14-71)||(29795447-29795504)
chr2 (1-38)||(34373049-34373086)
chr2 (1-74)||(38598339-38598412)
chr2 (1-70)||(38777903-38777972)
chr2 (1-38)||(40721815-40721852)
chr2 (1-73)||(25801803-25801875)
chr2 (1-37)||(26809536-26809572)
[»] chr7 (26 HSPs)
chr7 (1-71)||(24380711-24380781)
chr7 (1-75)||(33465029-33465103)
chr7 (1-71)||(40108135-40108205)
chr7 (1-73)||(27866527-27866599)
chr7 (1-76)||(25272597-25272672)
chr7 (1-71)||(5905955-5906025)
chr7 (1-71)||(25887594-25887664)
chr7 (1-71)||(34264594-34264664)
chr7 (1-77)||(6822523-6822599)
chr7 (87-135)||(31042139-31042187)
chr7 (90-145)||(7017180-7017235)
chr7 (90-145)||(7032538-7032593)
chr7 (1-71)||(2469703-2469773)
chr7 (1-71)||(34992325-34992395)
chr7 (1-71)||(37351980-37352050)
chr7 (1-71)||(49142507-49142577)
chr7 (1-38)||(155971-156008)
chr7 (1-30)||(2600524-2600553)
chr7 (14-71)||(22330634-22330691)
chr7 (1-38)||(28548211-28548248)
chr7 (1-74)||(37848610-37848683)
chr7 (1-38)||(37969975-37970012)
chr7 (1-38)||(41458890-41458927)
chr7 (43-80)||(43250167-43250204)
chr7 (1-61)||(29923692-29923752)
chr7 (40-76)||(36108167-36108203)
[»] chr3 (28 HSPs)
chr3 (1-71)||(29057659-29057729)
chr3 (1-71)||(29846881-29846951)
chr3 (1-71)||(48490503-48490573)
chr3 (1-71)||(1765404-1765474)
chr3 (1-71)||(3484770-3484840)
chr3 (1-71)||(35368622-35368692)
chr3 (1-71)||(50745560-50745630)
chr3 (1-38)||(2280221-2280258)
chr3 (11-71)||(47683801-47683861)
chr3 (1-76)||(43169743-43169818)
chr3 (90-132)||(4276977-4277019)
chr3 (17-71)||(23906993-23907047)
chr3 (3-73)||(43149335-43149405)
chr3 (9-75)||(46574083-46574149)
chr3 (1-71)||(49361825-49361895)
chr3 (1-38)||(7294089-7294126)
chr3 (1-38)||(9557912-9557949)
chr3 (3-72)||(26548766-26548835)
chr3 (92-145)||(29955134-29955187)
chr3 (92-145)||(30004288-30004341)
chr3 (45-74)||(51230653-51230682)
chr3 (7-71)||(52564643-52564705)
chr3 (34-74)||(16295461-16295501)
chr3 (7-71)||(28700472-28700536)
chr3 (7-70)||(35377077-35377141)
chr3 (1-64)||(38692314-38692375)
chr3 (1-72)||(47484289-47484361)
chr3 (90-126)||(51541254-51541290)
[»] chr6 (10 HSPs)
chr6 (87-135)||(4033083-4033131)
chr6 (1-74)||(16121160-16121233)
chr6 (1-73)||(32644621-32644693)
chr6 (1-72)||(9395327-9395398)
chr6 (1-71)||(2165290-2165360)
chr6 (1-71)||(2176923-2176993)
chr6 (1-71)||(25561930-25562000)
chr6 (1-71)||(26101444-26101514)
chr6 (2-72)||(32135422-32135492)
chr6 (34-74)||(25924898-25924938)
[»] chr5 (15 HSPs)
chr5 (1-71)||(12203158-12203228)
chr5 (1-38)||(29765874-29765911)
chr5 (4-71)||(372713-372780)
chr5 (1-64)||(7080548-7080611)
chr5 (1-71)||(6865777-6865847)
chr5 (5-75)||(8442166-8442236)
chr5 (1-63)||(8725412-8725474)
chr5 (3-49)||(10469939-10469985)
chr5 (1-71)||(11878440-11878510)
chr5 (5-71)||(43153054-43153120)
chr5 (14-71)||(14206400-14206457)
chr5 (1-38)||(17990258-17990295)
chr5 (1-70)||(33910078-33910147)
chr5 (30-78)||(16143383-16143431)
chr5 (1-77)||(32732109-32732184)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-76)||(31590-31665)
[»] scaffold0542 (1 HSPs)
scaffold0542 (1-71)||(2854-2924)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-71)||(17049-17119)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 644771 - 644536
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaatttaatggtttcgtgtgaatttta 100  Q
    |||||||||||| |||||| |||||||||| | ||| | |||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  644771 agagaataaaaatataatgcgagtgtgagagaaaaaattgtataaaaatggttgtacaaatattatttctcataaatttaatggtttcatgtgaatttta 644672  T
Q  101 atcaatcaaaaatagtgtattgaaaagagtgtgttgctaacatttatttctcatgagtt-ggaatataaatttgtgtcttataatcaattttaaaaatca 199  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  644671 atcaat-aaaaatagtgtattgaaaagtgtatgttgataacatttatttctcatgagtttggaatataaatttgtatcttataatcaattctaaaaatca 644573  T
Q  200 agagttataaataatagtttcaagtagaatttgctat 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  644572 agagttataaataatagtttcaagtagaatttgctat 644536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 46903551 - 46903481
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  46903551 agagaataaaaacataatgtgagtatgagagagaaagttgtatcaaaatggttgtacaaatatcatttctc 46903481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43757669 - 43757599
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||| ||||||    
T  43757669 agagaataaaaacataatgtgagtatgaaagagaaagttgtatcaaaatggttgtacaaatatcatttctc 43757599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40139196 - 40139123
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    |||||||||||| ||||||||||| ||||| ||||||| ||   |||||||||||||||||||| |||||||||    
T  40139196 agagaataaaaatataatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctcata 40139123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37741942 - 37742005
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    |||||||||||||||||||| ||| ||| | ||||||| ||||||||||| |||||||||||||    
T  37741942 agagaataaaaacataatgtaagtatgaaagagaaagttgtatcaaaatgattgtacaaatatc 37742005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27687509 - 27687579
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||| ||||||||||| ||||| | ||||| ||  ||||||||||||||||||||| ||||||    
T  27687509 agagaataaaaatataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 27687579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 41507194 - 41507256
Alignment:
Q  11 aacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    |||||||||||||| ||||| ||||||| ||  ||||||||||||||||||||| ||||||||    
T  41507194 aacataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcat 41507256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 48872026 - 48872092
Alignment:
Q  9 aaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataa 75  Q
    ||||||||||||| |||||||| ||||||| ||   |||||||||||||||||||| ||||||||||    
T  48872026 aaaacataatgtgggtgtgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctcataa 48872092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49589964 - 49590034
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||| ||||||||||| ||||||| ||||| |||  ||| |||||||||||||||| ||||||    
T  49589964 agagaataaaaatataatgtgagtatgagataaaaagttgtaataaagtggttgtacaaatatcatttctc 49590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5477153 - 5477234
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaatttaat 82  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||| |||||| ||||||    
T  5477153 agagaataaaagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttatcataattttaat 5477234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50460702 - 50460771
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttct 70  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||||||||||||||||| |||||    
T  50460702 agagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 42539481 - 42539418
Alignment:
Q  8 aaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||||||||| ||||| ||||||| ||  || |||||||||||||||||| ||||||    
T  42539481 aaaaacataatgtgagtctgagagagaaagttgtcacataatggttgtacaaatatcatttctc 42539418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 16836111 - 16836177
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    |||||||||||||||||| ||||| | ||||| ||  ||||||| ||||||||||||| ||||||||    
T  16836111 taaaaacataatgtgagtatgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctcat 16836177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40596044 - 40596114
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||| ||| || ||||||||||| ||||| ||||||| ||  ||||||||||||||||||||| ||||||    
T  40596044 agagagtaagaatataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 40596114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 48325768 - 48325838
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| |  ||||||||||| ||||||||||| | ||  ||||||||||||||||||||| ||||||    
T  48325768 agagaataagagtataatgtgagtatgagatagaaaattgtcacaaaatggttgtacaaatatcatttctc 48325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49453561 - 49453491
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||||||    
T  49453561 agagaataaaagtataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 49453491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 19427589 - 19427521
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||  ||||||||||| || || ||||||| ||| ||||||||||||| ||||||| ||||||    
T  19427589 agaataaaattataatgtgagtatgtgagagaaagttgtaccaaaatggttgtataaatatcatttctc 19427521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 30414941 - 30414869
Alignment:
Q  5 aataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaat 77  Q
    ||||| || ||||||||||| ||||| |||| || |||  |||||||||||||||||||| |||||| |||||    
T  30414941 aataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaaatatcatttctcttaaat 30414869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 35752138 - 35752190
Alignment:
Q  92 tgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacatt 144  Q
    |||||||||| |||| ||||||||||| ||||||| |||||||||||| ||||    
T  35752138 tgaattttaaccaataaaaaatagtgtgttgaaaacagtgtgttgctagcatt 35752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 16252762 - 16252821
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||||||| ||| | ||||||| |||  |||||||||||||||||||| ||||||||    
T  16252762 ataatgtgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctcat 16252821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 21446211 - 21446278
Alignment:
Q  4 gaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| ||||||||||| ||||| ||||||| |||  |||||| ||||| ||||||| ||||||    
T  21446211 gaataaaaatataatgtgagtatgagagagaaagttgtactaaaatgattgtataaatatcatttctc 21446278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 30596794 - 30596720
Alignment:
Q  2 gagaataaaaacataatgtgagtgtgagataga--aagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    |||| |||||||||||| ||||| ||||| |||  |||| ||| ||||||||||||||| ||||| |||||||||    
T  30596794 gagactaaaaacataatatgagtatgagaaagagaaagttgtaccaaaatggttgtacatatatcatttctcata 30596720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35030752 - 35030823
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||| ||| ||||| ||||||| |||  |||||||||||||||||| | |||||||    
T  35030752 agagaataagaagataatgtaagtatgagagagaaagttgtacaaaaatggttgtacaaataacatttctca 35030823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41558074 - 41558011
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    |||| ||||||||||||||||||| ||||| ||  ||| ||  |||||||||||||||||||||    
T  41558074 agaggataaaaacataatgtgagtatgagagagtgagttgtcacaaaatggttgtacaaatatc 41558011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11121562 - 11121492
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  ||| | |||||||||||||| ||||||    
T  11121562 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcatttctc 11121492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45272150 - 45272220
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||   ||| |||||||||||||||| ||||||    
T  45272150 agagaataaaaggataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctc 45272220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2827700 - 2827737
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  2827700 agagaataaaaacataatgtgagtatgagagagaaagt 2827737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11897255 - 11897218
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  11897255 agagaataaaaacataatgtgagtatgagagagaaagt 11897218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 23400023 - 23400064
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctcataa 75  Q
    ||||| |||| |||||||||||||||||||| ||||||||||    
T  23400023 aaagttgtataaaaatggttgtacaaatatcatttctcataa 23400064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27787570 - 27787533
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  27787570 agagaataaaaacataatgtgagtatgagagagaaagt 27787533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 36954733 - 36954671
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| ||||| |||||||  | ||||||  |||||||||||||| ||||||    
T  36954733 taaaaacataatgtgagtatgagaaagaaagt--tgtcaaaaatgttgtacaaatatcatttctc 36954671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 45925149 - 45925104
Alignment:
Q  94 aattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgcta 139  Q
    ||||||||||||| ||| | |||||||||||||| |||||||||||    
T  45925149 aattttaatcaattaaataaagtgtattgaaaagtgtgtgttgcta 45925104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47113355 - 47113318
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  47113355 agagaataaaaacataatgtgagtatgagagagaaagt 47113318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 51718622 - 51718691
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagt-atcaaaatggttgtacaaatatcttttctcataa 75  Q
    |||||| ||||||||||| ||||| ||||||| || |  ||||||||||| |||||||| ||||||||||    
T  51718622 taaaaagataatgtgagtatgagagagaaagttgtgaaaaaaatggttgttcaaatatcatttctcataa 51718691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 14983848 - 14983784
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||| | ||||| ||||||| ||   ||| |||||||||||||||| ||||||    
T  14983848 taaaaacataatgtgaatatgagagagaaagttgttaaaaagtggttgtacaaatatcatttctc 14983784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 31433568 - 31433500
Alignment:
Q  5 aataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    |||||||||||||||||||| ||||| | ||| | ||   |||||||||||||||||||  ||||||||    
T  31433568 aataaaaacataatgtgagtatgagagaaaaaattgtcgtaaaatggttgtacaaatataatttctcat 31433500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 33358154 - 33358218
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||| ||||||||||| ||||| ||||||| ||  |||||||| ||| |||||||| ||||||    
T  33358154 taaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctc 33358218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 37669435 - 37669395
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  37669435 aaagttgtatcaaaatgattgtacaaatatcatttctcata 37669395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45405809 - 45405879
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  45405809 agagaataaaaacataatgtgagtatgagagaaaaagttgtatcaaaatggttgtacaaatatcatttctc 45405879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25430727 - 25430657
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| |||||||||| || |||  |||||||||||||||||||| ||||||    
T  25430727 agagaataagaagataatgtgagtatgagatagaaggttgtacaaaaatggttgtacaaatatcatttctc 25430657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32777966 - 32777894
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||||| || ||||||||||| | ||| ||||||| |||| |||||||||||||| ||||| ||||||||    
T  32777966 agagaataagaagataatgtgagtataagagagaaagttgtataaaaatggttgtacagatatcatttctcat 32777894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 38939181 - 38939249
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||| ||||| ||||||| |||  ||||| |||||| ||||||| ||||||    
T  38939181 agaataaaaacataatgtgagtatgagagagaaagttgtacaaaaatagttgtagaaatatcatttctc 38939249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6243115 - 6243044
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||| ||||||||||||| |||||||    
T  6243115 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctca 6243044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36675406 - 36675335
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| |||||||| ||||| ||||| | ||||| |||  |||||||||||||||||||| |||||||    
T  36675406 agagaataataacataatatgagtatgagagaaaaagttgtacaaaaatggttgtacaaatatcatttctca 36675335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7325796 - 7325726
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| ||||| ||||||| ||   ||| ||| |||||||||||| ||||||    
T  7325796 agagaataaaaacataatgtgagtatgagagagaaagttgttataaagtggatgtacaaatatcatttctc 7325726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13924092 - 13924022
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||  ||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  13924092 agagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 13924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 29509303 - 29509259
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctcataaatt 78  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||    
T  29509303 aaagttgtagcaaaatggttgtacaaatatcatttctcataaatt 29509259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23265344 - 23265415
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||| ||||| ||| |||||||||| |||||||    
T  23265344 agagaataagaagataatgtgagtatgagagaaaaagttgtataaaaatagttatacaaatatcatttctca 23265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 42786705 - 42786740
Alignment:
Q  45 aaaatggttgtacaaatatcttttctcataaattta 80  Q
    |||||||||||||||||||| |||||||||||||||    
T  42786705 aaaatggttgtacaaatatcatttctcataaattta 42786740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14233634 - 14233704
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||| |||| ||||| ||||||| |||  ||||| |||||||||||||| ||||||    
T  14233634 agagaataagaagataatgcgagtatgagagagaaagttgtaaaaaaatagttgtacaaatatcatttctc 14233704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37471724 - 37471654
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||||||||  |||| ||||||| |||  |||||| ||||||||||||| ||||||    
T  37471724 agagaataagaagataatgtgagtacgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 157131 - 157074
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    |||||| ||||||| ||| ||||| ||||||| ||  |||||||||||||||||||||    
T  157131 taaaaatataatgtaagtatgagagagaaagttgtcgcaaaatggttgtacaaatatc 157074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 5740781 - 5740850
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    |||||||||||||||||| ||||| | ||||| ||   ||| |||||||||||||||| |||||| ||||    
T  5740781 taaaaacataatgtgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcatttctcttaaa 5740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12490762 - 12490799
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  12490762 agagaataaaaacataatgtgagtatgagagagaaagt 12490799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 14710885 - 14710946
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    |||||||||  ||||||||||| ||||| ||||||| ||  ||||||| |||||||||||||    
T  14710885 agaataaaagtataatgtgagtatgagagagaaagttgtcacaaaatgattgtacaaatatc 14710946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24946083 - 24946046
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  24946083 agagaataaaaacataatgtgagtatgagagagaaagt 24946046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32674222 - 32674259
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  32674222 agagaataaaaacataatgtgagtatgagagagaaagt 32674259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 37392131 - 37392188
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||| ||||| ||||||| ||   |||||||||||||||||||| ||||||    
T  37392131 ataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 37392188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38174223 - 38174296
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaa-atggttgtacaaatatcttttctcat 73  Q
    ||||||||| || ||||||||||| ||||| ||||||| || | ||| || |||||||||||||| ||||||||    
T  38174223 agagaataagaatataatgtgagtatgagagagaaagttgtctaaaagatagttgtacaaatatcatttctcat 38174296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 1370288 - 1370348
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||||| || || ||||||| ||  |||| |||||||||||||||| |||||||||    
T  1370288 ataatgtgagtatgtgagagaaagttgttacaaagtggttgtacaaatatcatttctcata 1370348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 1796551 - 1796495
Alignment:
Q  16 aatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| ||||| ||||||| ||  |||| |||||||||||||||| |||||||    
T  1796551 aatgtgagtatgagaaagaaagttgtcacaaagtggttgtacaaatatcatttctca 1796495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 13772442 - 13772406
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaa 126  Q
    ||||||||||||||||||||||| | |||||||||||    
T  13772442 tgtgaattttaatcaatcaaaaaaaatgtattgaaaa 13772406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 23848307 - 23848267
Alignment:
Q  92 tgaattttaatcaatcaaaaatagtgtattgaaaagagtgt 132  Q
    ||||||||||||||||||| ||||||| |||||||| ||||    
T  23848307 tgaattttaatcaatcaaagatagtgtgttgaaaagtgtgt 23848267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 30439503 - 30439571
Alignment:
Q  9 aaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaat 77  Q
    |||| ||||||||||| ||||| ||||||| ||  |||||||| ||| |||||||| |||||| |||||    
T  30439503 aaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctcttaaat 30439571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 43873735 - 43873767
Alignment:
Q  44 caaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||||||||||||||| |||||||||||    
T  43873735 caaaatggttgtacaaatatcatttctcataaa 43873767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9827973 - 9828043
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  9827973 agagaataaaaacataatgtgagtgtgagagagaaagttgtactaaaatggttgtacaaatatcatttctc 9828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37731996 - 37731926
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||||||| ||||||    
T  37731996 agagaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 46686312 - 46686245
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| ||||||    
T  46686312 agaataaaaacataatgtgagtatgagagagaaagttgta-caaaatggttgtacaaatatcatttctc 46686245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 52375011 - 52375066
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    |||||||||||| |||||||||| |||||||||||||  |||||||||||||||||    
T  52375011 tgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgttgctaacattt 52375066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 1868887 - 1868953
Alignment:
Q  5 aataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||| || ||||||||||| ||||||||||||| |||  |||||||||||||||||||| ||||||    
T  1868887 aataagaagataatgtgagtatgagatagaaagttgtacaaaaatggttgtacaaatatcatttctc 1868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7795095 - 7795022
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||| || ||||||| ||| ||||| ||||||| |||  |||||||||||||||||||| |||||||||    
T  7795095 agagaataagaagataatgtaagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttctcata 7795022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28899207 - 28899278
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    |||||||| | ||||||||| | ||||| ||||||| ||| ||||||| ||||||||||||| |||||||||    
T  28899207 agaataaatatataatgtgaatatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctcata 28899278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 37022326 - 37022272
Alignment:
Q  17 atgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||| ||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  37022326 atgtgagtatgagagataaagttgtatcaaaatggttgtacaaatatcatttctc 37022272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1987703 - 1987740
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1987703 agagaataaaaacataatgtgagtgtgagagagaaagt 1987740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 24310526 - 24310583
Alignment:
Q  16 aatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||||| ||||| ||||||| |||  |||||||||||||||||||| ||||||||    
T  24310526 aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctcat 24310583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 42490984 - 42490920
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| ||||| ||||||| ||   ||| |||||||||||||||| ||||||    
T  42490984 taaaaacataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctc 42490920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33093113 - 33093180
Alignment:
Q  9 aaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    |||| ||||||||||||||| | ||||||| ||  |||||| |||||||||||||| |||||| ||||    
T  33093113 aaaatataatgtgagtgtgaaaaagaaagttgtcacaaaatagttgtacaaatatcatttctcttaaa 33093180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39241291 - 39241362
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| |  ||||||||||| ||||| ||||||| ||  |||| |||||||||||||||| |||||||    
T  39241291 agagaataagaggataatgtgagtatgagagagaaagttgtcacaaattggttgtacaaatatcatttctca 39241362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4511895 - 4511825
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| ||   ||||||||| |||||||||| ||||||    
T  4511895 agagaataagaatataatgtgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctc 4511825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27384257 - 27384187
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||| ||| | ||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  27384257 agagaataagaatataatatgaatatgagagagaaagttgtaataaaatggttgtacaaatatcatttctc 27384187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 32365667 - 32365729
Alignment:
Q  11 aacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||| |||||| | ||||| ||||||| ||  ||||||||||||||||||||| ||||||||    
T  32365667 aacatcatgtgaatatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcat 32365729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1031836 - 1031799
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  1031836 agagaataaaaacataatgtgagtatgagagagaaagt 1031799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 8848779 - 8848710
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||| || ||||||||||||| ||| ||||| | |||| ||| | |||||||||||||| |||||||    
T  8848779 agaataagaagataatgtgagtgtaagagagaaaattgtataaaatttgttgtacaaatatcatttctca 8848710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12241139 - 12241102
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  12241139 agagaataaaaacataatgtgagtatgagagagaaagt 12241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28676142 - 28676211
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttct 70  Q
    ||||| ||| || ||||||||||| ||| | ||||||| ||  ||||||||||||||||||||| |||||    
T  28676142 agagagtaagaatataatgtgagtatgaaagagaaagttgtcacaaaatggttgtacaaatatcatttct 28676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 30042161 - 30042128
Alignment:
Q  44 caaaatggttgtacaaatatcttttctcataaat 77  Q
    ||||||||||||||||||||| ||||||||||||    
T  30042161 caaaatggttgtacaaatatcatttctcataaat 30042128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33820326 - 33820363
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  33820326 agagaataaaaacataatgtgagtatgagagagaaagt 33820363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34538011 - 34537974
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  34538011 agagaataaaaacataatgtgagtatgagagagaaagt 34537974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 35037646 - 35037609
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  35037646 aaagttgtatcaaaatggttgtacaaatatcatttctc 35037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 54848219 - 54848150
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttct 70  Q
    ||||||||| || ||||||||| | ||||| |||| || |||  |||||||||||||||||||| |||||    
T  54848219 agagaataagaaaataatgtgaatatgagagagaaggttgtacaaaaatggttgtacaaatatcatttct 54848150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 2109507 - 2109443
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| ||| | ||||||| ||   || ||||||||||||||||| ||||||    
T  2109507 taaaaacataatgtgagtatgaaagagaaagttgtcaaaagatggttgtacaaatatcatttctc 2109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 2247628 - 2247580
Alignment:
Q  87 tcgtgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgtt 135  Q
    |||||||||||||||||||| ||| | ||||| |||||||| |||||||    
T  2247628 tcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgtt 2247580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52851410 - 52851338
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    |||||||||||| ||||||||||| || || ||||||| ||    |||||||||| |||||||| ||||||||    
T  52851410 agagaataaaaatataatgtgagtatgtgagagaaagttgtcatgaaatggttgtgcaaatatcatttctcat 52851338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 24727494 - 24727424
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| ||||||||    
T  24727494 agaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatggttgtacaaatatcatttctcat 24727424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38724308 - 38724378
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||||||||| ||||| |  ||  |||||||||||||||||||| ||||||    
T  38724308 agagaataaaaacataatgtgagtgtgagagagaaaattatactaaaatggttgtacaaatatcatttctc 38724378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27329099 - 27329169
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||||||||||||  || ||||| ||||||| ||| ||||||| ||||||||||||| ||||||    
T  27329099 agagaataaaaacataatgtaggtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 27329169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 7121453 - 7121389
Alignment:
Q  8 aaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||||||||||| ||||| ||||||| ||  |||||||||| |||||||||| |||||||    
T  7121453 aaaaacataatgtgagtatgagagagaaagttgttacaaaatggttatacaaatatcatttctca 7121389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8757625 - 8757554
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||| |||||||||||||||||| | |||||||    
T  8757625 agagaataagaagataatgtgagtatgagagataaagttgtataaaaatggttgtacaaataacatttctca 8757554  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 42251257 - 42251312
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    ||||||||||||||||||||| | ||||| |||||||| ||||||||||| |||||    
T  42251257 tgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 42251312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45202122 - 45202193
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||||| | ||||| ||||||| |||  |||||||||||||||||||| |||||||    
T  45202122 agagaataagaagataatgtgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctca 45202193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22353165 - 22353235
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||| |||| |||||||||||||| ||||| ||||||| ||  ||||||| ||||||||||||| ||||||    
T  22353165 agaggataacaacataatgtgagtatgagaaagaaagttgtcacaaaatgattgtacaaatatcatttctc 22353235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27538906 - 27538979
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||| || ||||||||||| | | | ||||||| |||  |||||||||||||||||||| |||||||||    
T  27538906 agagaataagaagataatgtgagtatcatagagaaagttgtacaaaaatggttgtacaaatatcatttctcata 27538979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 41496104 - 41496059
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgtt 135  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||    
T  41496104 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtt 41496059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 35792637 - 35792701
Alignment:
Q  9 aaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||| |||||||| ||||| | ||| | ||| ||||||||||||||||||||| ||||||||    
T  35792637 aaaacatgatgtgagtatgagaaaaaaaattgtaacaaaatggttgtacaaatatcatttctcat 35792701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6885470 - 6885545
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||| || ||||||||||| ||||| ||||| | |||| ||||| |||||||||| ||| |||||| ||||    
T  6885470 agagaataagaagataatgtgagtatgagagagaaaattgtataaaaatagttgtacaaaaatcatttctcttaaa 6885545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43725286 - 43725211
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||| ||   ||| | | |||||||||||| |||||| ||||    
T  43725286 agagaataaaaacataatgtgagtatgagagagaaagttgtcataaagtagatgtacaaatatcatttctcgtaaa 43725211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 285459 - 285529
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| ||||| || || ||||||| ||  |||||||  |||||||||||| ||||||    
T  285459 agagaataaaaacataatatgagtatgcgagagaaagttgttccaaaatgaatgtacaaatatcatttctc 285529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22296119 - 22296189
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| | ||| ||||| | |||  |||||||||||||||||||| ||||||    
T  22296119 agagaataagaagataatgtgagtatcagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 22296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 45300461 - 45300503
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgt 132  Q
    |||||||||||| |||||||||| |||||||||||||| ||||    
T  45300461 tgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13850174 - 13850211
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  13850174 agagaataaaaacataatgtgagtatgagagagaaagt 13850211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20247857 - 20247894
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  20247857 agagaataaaaacataatgtgagtatgagagagaaagt 20247894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 29795504 - 29795447
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||| || || ||||||| ||  ||||||||||||||||||||| ||||||    
T  29795504 ataatgtgagtatgtgagagaaagttgtcacaaaatggttgtacaaatatcatttctc 29795447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34373086 - 34373049
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  34373086 agagaataaaaacataatgtgagtatgagagagaaagt 34373049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38598339 - 38598412
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||| || ||||||||||| ||||| |||| || |||  ||||||||| |||||||||| ||| |||||    
T  38598339 agagaataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttatacaaatatcatttatcata 38598412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38777972 - 38777903
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttct 70  Q
    ||||||||| || ||||||||| | ||||| ||||| | |||| |||||| ||||||||||||| |||||    
T  38777972 agagaataagaagataatgtgaatatgagagagaaaattgtataaaaatgattgtacaaatatcctttct 38777903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40721852 - 40721815
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  40721852 agagaataaaaacataatgtgagtatgagagagaaagt 40721815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25801803 - 25801875
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||||| |  ||||||||||| ||||| | ||||| ||  |||| |||||||||||||||| ||||||||    
T  25801803 agagaataagagtataatgtgagtatgagagataaagttgtcacaaattggttgtacaaatatcatttctcat 25801875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26809572 - 26809536
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaag 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  26809572 agagaataaaaacataatgtgagtatgagagagaaag 26809536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24380711 - 24380781
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||    
T  24380711 agagaataagaagataatgtgagtatgagaaagaaagttgtataaaaatggttgtacaaatatcatttctc 24380781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33465029 - 33465103
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataa 75  Q
    ||||||||| || ||||||||||| ||||| ||||| | |||  |||||||||||||||||||| ||||||||||    
T  33465029 agagaataagaagataatgtgagtatgagagagaaaattgtacaaaaatggttgtacaaatatcatttctcataa 33465103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40108205 - 40108135
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||| |||||||||||||||| ||| ||||||    
T  40108205 agagaataagaagataatgtgagtatgagagagaaagttgtataaaaatggttgtacaaacatcatttctc 40108135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27866527 - 27866599
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||  |||||||||||||||||||| ||||||||    
T  27866527 agagaataagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctcat 27866599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25272672 - 25272597
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||| || ||||||||||| |  || ||||||| |||  |||||||||||||||||||| |||||||||||    
T  25272672 agagaataagaagataatgtgagtatatgagagaaagttgtacaaaaatggttgtacaaatatcatttctcataaa 25272597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5905955 - 5906025
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||||  |||||||||| ||||| |||||||  || ||||||| ||||||||||||| ||||||    
T  5905955 agagaataaaaatctaatgtgagtatgagagagaaagttataccaaaatgattgtacaaatatcatttctc 5906025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25887664 - 25887594
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||  |||| ||| |||||||||||| ||||||    
T  25887664 agagaataaaaacatattgtgagtatgagagagaaagttgtcacaaagtggatgtacaaatatcatttctc 25887594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34264664 - 34264594
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||||||| | |||  |||||| ||  ||||||||| ||||||||||| ||||||    
T  34264664 agagaataaaaacataatgtgagtataagagcgaaagttgtcacaaaatggtcgtacaaatatcatttctc 34264594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6822523 - 6822599
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaat 77  Q
    ||||||||| || ||||||||||| ||||| | ||||| ||   |||||||||||||||||||| |||||| |||||    
T  6822523 agagaataagaagataatgtgagtatgagagaaaaagttgttagaaaatggttgtacaaatatcatttctcttaaat 6822599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 31042187 - 31042139
Alignment:
Q  87 tcgtgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgtt 135  Q
    ||||||||||||||| |||||||| ||| |||||||||||| |||||||    
T  31042187 tcgtgtgaattttaaccaatcaaagataatgtattgaaaagtgtgtgtt 31042139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 7017180 - 7017235
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    |||||||||||| |||||||| | |||||||||||||  ||||||||||| |||||    
T  7017180 tgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcattt 7017235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 7032538 - 7032593
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    |||||||||||| |||||||| | |||||||||||||  ||||||||||| |||||    
T  7032538 tgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcattt 7032593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2469773 - 2469703
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || | ||||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||||||    
T  2469773 agagaataagaatacaatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 2469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34992325 - 34992395
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||||| ||| ||| | ||| ||| ||   |||||||||||||||||||| ||||||    
T  34992325 agagaataaaaacataatgtaagtatgaaagagagagttgtcataaaatggttgtacaaatatcatttctc 34992395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37351980 - 37352050
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| |  ||||||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||||||    
T  37351980 agagaataagagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 37352050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49142507 - 49142577
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||| |  ||  |||||||||||||||||||| ||||||    
T  49142507 agagaataagaagataatgtgagtatgagagagaaaattttacaaaaatggttgtacaaatatcatttctc 49142577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 155971 - 156008
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  155971 agagaataaaaacataatgtgagtatgagagagaaagt 156008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2600524 - 2600553
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgaga 30  Q
    ||||||||||||||||||||||||||||||    
T  2600524 agagaataaaaacataatgtgagtgtgaga 2600553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 22330634 - 22330691
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||||||    
T  22330634 ataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 22330691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28548211 - 28548248
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  28548211 agagaataaaaacataatgtgagtatgagagagaaagt 28548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37848610 - 37848683
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||| || ||||| | ||| ||||| ||||||| |||  |||||| ||||||||||||| |||||||||    
T  37848610 agagaataagaagataatattagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctcata 37848683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37970012 - 37969975
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  37970012 agagaataaaaacataatgtgagtatgagagagaaagt 37969975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41458890 - 41458927
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  41458890 agagaataaaaacataatgtgagtatgagagagaaagt 41458927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 43250204 - 43250167
Alignment:
Q  43 tcaaaatggttgtacaaatatcttttctcataaattta 80  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  43250204 tcaaaatggttgtacaaatatcatttctcctaaattta 43250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29923752 - 29923692
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaat 61  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||| ||||||||||    
T  29923752 agagaataataagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaat 29923692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 36108203 - 36108167
Alignment:
Q  40 gtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  36108203 gtatcaaaatggttgtacaaatatcatttctcttaaa 36108167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29057729 - 29057659
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  29057729 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29846881 - 29846951
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  29846881 agagaataagaatataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 48490503 - 48490573
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||| ||||||||||| ||||| ||||||| |||  ||| |||||||||||||||| ||||||    
T  48490503 agagaataaaaagataatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcatttctc 48490573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1765474 - 1765404
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||||||||||||| || ||||| ||||||| ||  |||||||  |||||||||||| ||||||    
T  1765474 agagaataaaaacataatgtgcgtatgagagagaaagttgtcacaaaatgaatgtacaaatatcatttctc 1765404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3484840 - 3484770
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||||||| ||||||||| ||||||    
T  3484840 agagaataagaatataatgtgagtatgagagagaaagttgtaataaaatggttggacaaatatcatttctc 3484770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35368692 - 35368622
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  ||||| |||||||||||||| ||||||    
T  35368692 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 35368622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 50745630 - 50745560
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||| ||||||||||||| ||||||    
T  50745630 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 50745560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2280258 - 2280221
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2280258 agagaataaaaacataatgtgagtgtgagagagaaagt 2280221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 47683861 - 47683801
Alignment:
Q  11 aacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||| ||||||||| ||||| ||||||| ||  ||||||||||||||||||||| ||||||    
T  47683861 aacacaatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 47683801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43169743 - 43169818
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||| |  ||||||||||| ||||| | ||||| ||  ||||||||||||||||||||| |||||| ||||    
T  43169743 agagaataagagaataatgtgagtatgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctcttaaa 43169818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 4277019 - 4276977
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgt 132  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||    
T  4277019 tgtgaattttaatcaatcaaaaagagtatattgaaaagtgtgt 4276977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 23906993 - 23907047
Alignment:
Q  17 atgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||| ||||| ||||||| ||| || |||||||||||||||||| ||||||    
T  23906993 atgtgagtatgagagagaaagttgtaacataatggttgtacaaatatcatttctc 23907047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 43149335 - 43149405
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||||| || ||||||||||| ||||| ||||||| |||  ||||| |||||||||||| | ||||||||    
T  43149335 agaataagaagataatgtgagtatgagaaagaaagttgtacaaaaatagttgtacaaataacatttctcat 43149405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 46574149 - 46574083
Alignment:
Q  9 aaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataa 75  Q
    ||||||||||| | || ||||| |||||||  |  ||||||||||||||||||||| ||||||||||    
T  46574149 aaaacataatgcgggtatgagagagaaagtgttcacaaaatggttgtacaaatatcatttctcataa 46574083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49361825 - 49361895
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||  |||||| ||||||||||||| ||||||    
T  49361825 agagaataagaagataatgtgagtatgagagaaaaagttgtacaaaaatgattgtacaaatatcatttctc 49361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7294089 - 7294126
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  7294089 agagaataaaaacataatgtgagtatgagagagaaagt 7294126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9557912 - 9557949
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  9557912 agagaataaaaacataatgtgagtatgagagagaaagt 9557949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 26548766 - 26548835
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    |||||||| | ||||||||||| ||||| ||||||| ||| |||||| ||||| |||||||  |||||||    
T  26548766 agaataaatatataatgtgagtatgagagagaaagttgtaccaaaatagttgtccaaatattatttctca 26548835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 29955134 - 29955187
Alignment:
Q  92 tgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    ||||||||||  |||||| || |||||||||||||| ||||||||||| |||||    
T  29955134 tgaattttaactaatcaagaagagtgtattgaaaagtgtgtgttgctagcattt 29955187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 30004288 - 30004341
Alignment:
Q  92 tgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgttgctaacattt 145  Q
    ||||||||||  |||||| || |||||||||||||| ||||||||||| |||||    
T  30004288 tgaattttaactaatcaagaagagtgtattgaaaagtgtgtgttgctagcattt 30004341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 51230653 - 51230682
Alignment:
Q  45 aaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||||||||||||||||||||||||    
T  51230653 aaaatggttgtacaaatatcttttctcata 51230682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 52564643 - 52564705
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| |||||  |||| | ||  ||||||||||||||||||||| ||||||    
T  52564643 taaaaacataatgtgagtatgaga--gaaaattgtcacaaaatggttgtacaaatatcatttctc 52564705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 16295501 - 16295461
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||| |||||||| |||||||||||||||| |||||||||    
T  16295501 aaagttgtatcaaattggttgtacaaatatcatttctcata 16295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 28700536 - 28700472
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| ||||| | ||||| ||   ||||||||||| |||||||| ||||||    
T  28700536 taaaaacataatgtgagtatgagagataaagttgtcaaaaaatggttgttcaaatatcatttctc 28700472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 35377077 - 35377141
Alignment:
Q  7 taaaaacataatgtgagtgtgagatagaaagtagtatcaaaa-tggttgtacaaatatcttttct 70  Q
    |||||||||||||||||||||||| ||||||| ||  ||||| | ||||| |||||||| |||||    
T  35377077 taaaaacataatgtgagtgtgagagagaaagttgtcacaaaagttgttgttcaaatatcatttct 35377141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38692314 - 38692375
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    |||||||||||||||||||||||| ||||  ||| ||| ||  |||||||||||| ||||||||    
T  38692314 agagaataaaaacataatgtgagtatgag--agagagttgtcacaaaatggttgtccaaatatc 38692375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 47484361 - 47484289
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagta-tcaaaatggttgtacaaatatcttttctca 72  Q
    |||||||||||| ||||||||||| ||||| | ||| | |||   |||||||||||||||||||| |||||||    
T  47484361 agagaataaaaagataatgtgagtatgagagaaaaaattgtacaaaaaatggttgtacaaatatcatttctca 47484289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 51541290 - 51541254
Alignment:
Q  90 tgtgaattttaatcaatcaaaaatagtgtattgaaaa 126  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  51541290 tgtgagttttaaccaatcaaaaatagtgtattgaaaa 51541254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 4033083 - 4033131
Alignment:
Q  87 tcgtgtgaattttaatcaatcaaaaatagtgtattgaaaagagtgtgtt 135  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  4033083 tcgtgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtt 4033131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16121233 - 16121160
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||||||| || ||||||| ||| ||| | ||||||| |||  |||||||||||||||||||| |||||||||    
T  16121233 agagaataagaagataatgtaagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctcata 16121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32644693 - 32644621
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcat 73  Q
    ||||| |||||| ||||||||||| ||||| ||||||| ||   ||||| |||||||||||||| ||||||||    
T  32644693 agagagtaaaaatataatgtgagtatgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctcat 32644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9395327 - 9395398
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    ||||||||| || ||||||||||| ||| | ||||||| |||  ||||| |||||||||||||| |||||||    
T  9395327 agagaataagaagataatgtgagtatgaaagagaaagttgtacaaaaatagttgtacaaatatcatttctca 9395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2165290 - 2165360
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||| |||| ||||| | ||||| |||  |||||||||||||||||||| ||||||    
T  2165290 agagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 2165360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2176923 - 2176993
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||| |||| ||||| | ||||| |||  |||||||||||||||||||| ||||||    
T  2176923 agagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 2176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25561930 - 25562000
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||| |||||| |||||| |||||| ||||||    
T  25561930 agagaataagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctc 25562000  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26101444 - 26101514
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||| | ||||| |||| |||||| |||||| |||||| ||||||    
T  26101444 agagaataagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctc 26101514  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 32135422 - 32135492
Alignment:
Q  2 gagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctca 72  Q
    |||||||| || ||||||||||| ||| | ||||||| |||  |||||| ||||||||||||| |||||||    
T  32135422 gagaataagaagataatgtgagtatgatagagaaagttgtacaaaaatgattgtacaaatatcatttctca 32135492  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 25924898 - 25924938
Alignment:
Q  34 aaagtagtatcaaaatggttgtacaaatatcttttctcata 74  Q
    ||||| ||| ||||||||||||||||||||| |||||||||    
T  25924898 aaagttgtagcaaaatggttgtacaaatatcatttctcata 25924938  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12203228 - 12203158
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||  ||||| ||||||| |||  |||||||||||||||||||| ||||||    
T  12203228 agagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 12203158  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29765911 - 29765874
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29765911 agagaataaaaacataatgtgagtgtgagagagaaagt 29765874  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 372713 - 372780
Alignment:
Q  4 gaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||||| ||||| ||||||| ||  ||||||||||||||||| ||| ||||||    
T  372713 gaataaaaatatcatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaaaatcatttctc 372780  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7080611 - 7080548
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatc 64  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  |||||| |||||||||||||    
T  7080611 agagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatc 7080548  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6865777 - 6865847
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||| |||||| || |||||||| ||||| ||||||| ||  |||| |||||||||||||||| ||||||    
T  6865777 agagagtaaaaatattatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 6865847  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8442236 - 8442166
Alignment:
Q  5 aataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataa 75  Q
    |||||||| ||||||||| | ||||| ||||||| |||  |||||  ||||||||||||| ||||||||||    
T  8442236 aataaaaagataatgtgaatatgagagagaaagttgtacaaaaataattgtacaaatatcatttctcataa 8442166  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8725412 - 8725474
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatat 63  Q
    ||||||||| || ||||||||||| ||||| ||||||| |||  ||| |||||||||||||||    
T  8725412 agagaataagaatataatgtgagtatgagagagaaagttgtaataaagtggttgtacaaatat 8725474  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 10469939 - 10469985
Alignment:
Q  3 agaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaat 49  Q
    |||||||||||||||||||||| ||||| ||||||| |||| |||||    
T  10469939 agaataaaaacataatgtgagtatgagagagaaagttgtataaaaat 10469985  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11878510 - 11878440
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || ||||||||||| ||||||||||| |  ||| |||||  ||||||||||||| ||||||    
T  11878510 agagaataagaaaataatgtgagtatgagatagaaaattatataaaaataattgtacaaatatcatttctc 11878440  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 43153054 - 43153120
Alignment:
Q  5 aataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||| ||||||||| | ||||| ||||||| |||  ||||| |||||||||||||| ||||||    
T  43153054 aataaaaagataatgtgaatatgagagagaaagttgtacaaaaattgttgtacaaatatcatttctc 43153120  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 14206457 - 14206400
Alignment:
Q  14 ataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||||| ||||| ||||||| ||   |||||||||||||||||||| ||||||    
T  14206457 ataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 14206400  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17990295 - 17990258
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  17990295 agagaataaaaacataatgtgagtatgagagagaaagt 17990258  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33910078 - 33910147
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttct 70  Q
    ||||||||| || ||||||||||| ||||| ||||||| ||   |||||||||| ||||||||| |||||    
T  33910078 agagaataagaatataatgtgagtatgagagagaaagttgtcaaaaaatggttgaacaaatatcatttct 33910147  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 16143431 - 16143383
Alignment:
Q  30 atagaaagtagtatcaaaatggttgtacaaatatcttttctcataaatt 78  Q
    ||||||||| ||  ||||||||||||||||||||| |||||||| ||||    
T  16143431 atagaaagttgtcacaaaatggttgtacaaatatcatttctcattaatt 16143383  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32732109 - 32732184
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaat 77  Q
    |||||||||||| | ||||||||| ||||| ||||||| |||  |||||| ||||||||||||  |||||| |||||    
T  32732109 agagaataaaaaaa-aatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatataatttctcttaaat 32732184  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31590 - 31665
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctcataaa 76  Q
    ||||||||| |  ||||||||||| ||||| ||||||| ||   |||||||||||||||||||| |||||| ||||    
T  31590 agagaataagagtataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctcttaaa 31665  T

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Target: scaffold0542 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2924 - 2854
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    |||||||||||||||||| | ||| ||| | ||||| | |||||||| || ||||||||||||| ||||||    
T  2924 agagaataaaaacataatataagtatgaaagagaaacttgtatcaaattgattgtacaaatatcatttctc 2854  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17119 - 17049
Alignment:
Q  1 agagaataaaaacataatgtgagtgtgagatagaaagtagtatcaaaatggttgtacaaatatcttttctc 71  Q
    ||||||||| || |||||| |||| ||||| | ||||| |||  |||||||||||||||||||| ||||||    
T  17119 agagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 17049  T

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