View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_high_28 (Length: 316)

Name: NF11092_high_28
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_high_28
NF11092_high_28
[»] chr4 (42 HSPs)
chr4 (205-285)||(37563340-37563420)
chr4 (206-281)||(52529147-52529222)
chr4 (206-281)||(54634079-54634154)
chr4 (204-281)||(30726805-30726882)
chr4 (206-281)||(40352300-40352375)
chr4 (205-281)||(26932517-26932593)
chr4 (205-285)||(26933325-26933405)
chr4 (230-281)||(39773362-39773413)
chr4 (206-281)||(49090381-49090456)
chr4 (207-281)||(1309178-1309252)
chr4 (206-271)||(1089658-1089723)
chr4 (204-285)||(13182158-13182239)
chr4 (206-271)||(49096425-49096490)
chr4 (206-281)||(6181855-6181930)
chr4 (210-281)||(9893328-9893399)
chr4 (206-281)||(31421640-31421715)
chr4 (206-281)||(46253421-46253496)
chr4 (205-275)||(30723054-30723124)
chr4 (206-271)||(1087794-1087859)
chr4 (211-287)||(49566507-49566584)
chr4 (206-270)||(13173168-13173232)
chr4 (206-265)||(49164997-49165054)
chr4 (204-251)||(41801031-41801078)
chr4 (205-281)||(55588347-55588423)
chr4 (206-281)||(3408304-3408379)
chr4 (206-281)||(21022951-21023026)
chr4 (204-271)||(54633744-54633811)
chr4 (268-314)||(6181762-6181808)
chr4 (203-285)||(7485720-7485802)
chr4 (268-314)||(40358251-40358297)
chr4 (205-251)||(41793264-41793310)
chr4 (268-314)||(41800908-41800954)
chr4 (277-314)||(9893236-9893273)
chr4 (206-271)||(26792318-26792383)
chr4 (206-271)||(37562999-37563064)
chr4 (206-271)||(49169171-49169236)
chr4 (204-281)||(55587291-55587368)
chr4 (268-316)||(1089553-1089601)
chr4 (268-316)||(1309083-1309131)
chr4 (233-281)||(16473743-16473791)
chr4 (268-316)||(37563249-37563297)
chr4 (268-316)||(54633984-54634032)
[»] chr8 (30 HSPs)
chr8 (206-281)||(184616-184691)
chr8 (206-281)||(36677993-36678068)
chr8 (203-314)||(2416134-2416245)
chr8 (206-281)||(22014499-22014574)
chr8 (205-281)||(1052491-1052567)
chr8 (206-285)||(489686-489765)
chr8 (207-278)||(15036769-15036840)
chr8 (205-281)||(15030817-15030893)
chr8 (209-281)||(26659391-26659463)
chr8 (205-281)||(45066425-45066501)
chr8 (206-285)||(23022347-23022426)
chr8 (206-285)||(42485598-42485677)
chr8 (206-271)||(22519669-22519734)
chr8 (205-281)||(25598-25674)
chr8 (206-293)||(915686-915773)
chr8 (210-281)||(22510486-22510557)
chr8 (206-268)||(45064226-45064288)
chr8 (210-271)||(483721-483782)
chr8 (206-271)||(22014180-22014245)
chr8 (211-287)||(30305601-30305678)
chr8 (211-287)||(32378979-32379056)
chr8 (211-287)||(32432934-32433011)
chr8 (205-285)||(32583986-32584066)
chr8 (206-281)||(28617503-28617578)
chr8 (206-271)||(184309-184374)
chr8 (206-271)||(23018619-23018684)
chr8 (206-271)||(36677646-36677711)
chr8 (268-316)||(184521-184569)
chr8 (268-316)||(489598-489646)
chr8 (205-281)||(28618499-28618575)
[»] chr7 (30 HSPs)
chr7 (206-281)||(10098181-10098256)
chr7 (206-281)||(42508091-42508166)
chr7 (206-281)||(15074292-15074367)
chr7 (206-280)||(41880448-41880522)
chr7 (204-281)||(18105305-18105382)
chr7 (206-271)||(20564007-20564072)
chr7 (206-281)||(35610479-35610554)
chr7 (210-275)||(40141296-40141361)
chr7 (204-281)||(48403304-48403381)
chr7 (206-262)||(618808-618864)
chr7 (205-281)||(7975673-7975749)
chr7 (206-287)||(45763313-45763395)
chr7 (211-287)||(30786485-30786562)
chr7 (211-287)||(43032912-43032989)
chr7 (215-287)||(43624203-43624276)
chr7 (203-271)||(603710-603778)
chr7 (268-316)||(15074197-15074245)
chr7 (205-281)||(46907473-46907549)
chr7 (206-285)||(18109834-18109913)
chr7 (204-251)||(20566453-20566500)
chr7 (206-281)||(27656973-27657048)
chr7 (206-280)||(7004-7078)
chr7 (268-314)||(17465684-17465730)
chr7 (268-314)||(17587484-17587530)
chr7 (206-251)||(10098267-10098312)
chr7 (204-285)||(10524416-10524497)
chr7 (204-281)||(12210653-12210730)
chr7 (266-314)||(9371358-9371406)
chr7 (206-281)||(9371451-9371527)
chr7 (205-281)||(13921327-13921403)
[»] chr3 (38 HSPs)
chr3 (206-281)||(1835084-1835159)
chr3 (206-278)||(41844431-41844503)
chr3 (206-281)||(16444542-16444617)
chr3 (206-278)||(35743352-35743425)
chr3 (204-281)||(42904246-42904323)
chr3 (204-281)||(46388890-46388967)
chr3 (206-271)||(50481457-50481522)
chr3 (206-281)||(34045342-34045417)
chr3 (206-280)||(29008820-29008894)
chr3 (206-271)||(2967999-2968064)
chr3 (206-251)||(46702119-46702164)
chr3 (204-285)||(3975664-3975745)
chr3 (211-287)||(30947711-30947788)
chr3 (206-271)||(49144530-49144595)
chr3 (205-251)||(34051440-34051486)
chr3 (206-251)||(2950267-2950312)
chr3 (204-281)||(4008386-4008463)
chr3 (211-268)||(8161047-8161104)
chr3 (206-271)||(9426565-9426630)
chr3 (206-271)||(46697645-46697710)
chr3 (204-268)||(54386065-54386129)
chr3 (204-271)||(3501969-3502036)
chr3 (206-281)||(11249587-11249662)
chr3 (277-316)||(35743458-35743497)
chr3 (207-285)||(1293312-1293390)
chr3 (268-314)||(2967896-2967942)
chr3 (268-314)||(46389014-46389060)
chr3 (268-314)||(46701996-46702042)
chr3 (268-314)||(49144427-49144473)
chr3 (205-251)||(54392122-54392168)
chr3 (204-281)||(19988392-19988469)
chr3 (206-271)||(35743654-35743719)
chr3 (206-251)||(46406718-46406763)
chr3 (206-251)||(49138515-49138560)
chr3 (205-271)||(1835401-1835464)
chr3 (211-251)||(3948667-3948707)
chr3 (268-316)||(41844333-41844381)
chr3 (233-285)||(52387746-52387798)
[»] chr2 (42 HSPs)
chr2 (206-281)||(44100636-44100711)
chr2 (206-275)||(21998148-21998217)
chr2 (206-281)||(28468575-28468650)
chr2 (206-281)||(45428550-45428625)
chr2 (206-271)||(17420502-17420567)
chr2 (204-281)||(42505826-42505903)
chr2 (209-281)||(22003465-22003537)
chr2 (205-281)||(30497013-30497089)
chr2 (206-262)||(38945696-38945752)
chr2 (205-281)||(39800716-39800792)
chr2 (206-281)||(39793897-39793972)
chr2 (210-281)||(43978474-43978545)
chr2 (206-280)||(15831061-15831135)
chr2 (210-281)||(3940793-3940864)
chr2 (204-271)||(30493291-30493358)
chr2 (206-285)||(39947534-39947613)
chr2 (268-314)||(5352020-5352066)
chr2 (205-271)||(5355605-5355671)
chr2 (206-268)||(42499687-42499749)
chr2 (211-287)||(213510-213587)
chr2 (211-287)||(10624523-10624600)
chr2 (204-256)||(3085969-3086021)
chr2 (205-281)||(29074066-29074142)
chr2 (209-281)||(43539801-43539873)
chr2 (204-251)||(17426492-17426539)
chr2 (206-281)||(20937832-20937907)
chr2 (206-289)||(20951101-20951184)
chr2 (277-316)||(21998253-21998292)
chr2 (206-285)||(26543238-26543317)
chr2 (206-281)||(43619206-43619281)
chr2 (268-314)||(3940700-3940746)
chr2 (268-314)||(15831183-15831229)
chr2 (268-314)||(20937954-20938000)
chr2 (206-248)||(28477163-28477205)
chr2 (210-251)||(3935768-3935809)
chr2 (211-287)||(5334515-5334592)
chr2 (211-287)||(18003330-18003407)
chr2 (206-269)||(5351897-5351961)
chr2 (206-266)||(10424774-10424834)
chr2 (204-296)||(36509901-36509993)
chr2 (268-316)||(42505731-42505779)
chr2 (205-281)||(43312665-43312741)
[»] chr1 (29 HSPs)
chr1 (204-281)||(44621181-44621258)
chr1 (206-281)||(13629338-13629413)
chr1 (206-281)||(19924689-19924764)
chr1 (206-280)||(8473717-8473791)
chr1 (206-281)||(3732417-3732492)
chr1 (206-281)||(26875627-26875702)
chr1 (206-281)||(30889995-30890070)
chr1 (206-281)||(38633217-38633292)
chr1 (206-296)||(43012693-43012783)
chr1 (206-271)||(26879369-26879434)
chr1 (206-281)||(22397754-22397829)
chr1 (206-293)||(47652662-47652749)
chr1 (206-296)||(43011762-43011852)
chr1 (204-281)||(586668-586745)
chr1 (211-287)||(3983025-3983102)
chr1 (206-271)||(8548743-8548808)
chr1 (211-287)||(31945919-31945996)
chr1 (211-287)||(38776184-38776261)
chr1 (203-271)||(3728666-3728734)
chr1 (211-287)||(3948460-3948539)
chr1 (211-267)||(20349396-20349452)
chr1 (268-316)||(29622393-29622441)
chr1 (85-116)||(52801795-52801826)
chr1 (226-292)||(38632446-38632512)
chr1 (206-271)||(585589-585654)
chr1 (277-314)||(2365300-2365337)
chr1 (206-271)||(15051422-15051487)
chr1 (206-282)||(30195446-30195522)
chr1 (268-316)||(30890117-30890165)
[»] chr6 (15 HSPs)
chr6 (206-281)||(26711983-26712057)
chr6 (210-270)||(30829726-30829786)
chr6 (204-285)||(11688046-11688127)
chr6 (206-271)||(27616649-27616714)
chr6 (205-262)||(18346974-18347031)
chr6 (205-281)||(13382562-13382638)
chr6 (206-251)||(11694154-11694199)
chr6 (211-267)||(1612826-1612882)
chr6 (266-314)||(11688168-11688216)
chr6 (206-281)||(6760935-6761010)
chr6 (242-293)||(35096642-35096693)
chr6 (205-271)||(6207167-6207233)
chr6 (268-314)||(27616771-27616817)
chr6 (268-314)||(30829622-30829668)
chr6 (206-266)||(32691085-32691145)
[»] scaffold0293 (2 HSPs)
scaffold0293 (209-281)||(786-858)
scaffold0293 (268-316)||(691-739)
[»] chr5 (19 HSPs)
chr5 (206-281)||(27659874-27659949)
chr5 (205-281)||(11027028-11027104)
chr5 (206-262)||(37820930-37820986)
chr5 (205-275)||(8580549-8580619)
chr5 (206-251)||(19041211-19041256)
chr5 (206-271)||(38860242-38860307)
chr5 (205-281)||(11033526-11033602)
chr5 (201-251)||(28241893-28241943)
chr5 (211-267)||(14279788-14279844)
chr5 (203-271)||(28238070-28238138)
chr5 (206-281)||(8574617-8574691)
chr5 (206-281)||(13837658-13837733)
chr5 (206-281)||(38853413-38853488)
chr5 (268-314)||(19041088-19041134)
chr5 (206-251)||(19035139-19035184)
chr5 (268-316)||(28241768-28241816)
chr5 (203-271)||(28876574-28876642)
chr5 (268-316)||(28876699-28876747)
chr5 (215-251)||(28886487-28886523)
[»] scaffold0744 (1 HSPs)
scaffold0744 (206-271)||(496-561)
[»] scaffold0101 (1 HSPs)
scaffold0101 (206-280)||(41121-41195)
[»] scaffold0494 (2 HSPs)
scaffold0494 (268-314)||(11424-11470)
scaffold0494 (206-281)||(11517-11592)
[»] scaffold0014 (1 HSPs)
scaffold0014 (206-251)||(84481-84526)
[»] scaffold0634 (1 HSPs)
scaffold0634 (205-281)||(7351-7427)
[»] scaffold0260 (1 HSPs)
scaffold0260 (211-267)||(11719-11775)
[»] scaffold0180 (1 HSPs)
scaffold0180 (206-285)||(15681-15760)
[»] scaffold1606 (1 HSPs)
scaffold1606 (206-251)||(55-100)
[»] scaffold0199 (1 HSPs)
scaffold0199 (206-271)||(10587-10652)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 37563420 - 37563340
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    ||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37563420 agagaattgctgttcccacatatggtaaggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 37563340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 52529147 - 52529222
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52529147 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 52529222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 54634154 - 54634079
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54634154 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 54634079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 30726882 - 30726805
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  30726882 aagagaattgctgttcccacatatagtatggatgtgccacacgagtaaaatacggaaatgtccttcggtagtaaactg 30726805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 40352300 - 40352375
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||    
T  40352300 gagaattgttgttcccacatatagtatggttgtgccacacgagtaaaatacgaaaatgctcttcggtagtaaactg 40352375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 26932517 - 26932593
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||||||| ||||  ||||| |||||||||||||||||    
T  26932517 agagaattgctgttcccacatatagtttggctgtgtcacacgagtaaattactcaaatgtccttcggtagtaaactg 26932593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 26933405 - 26933325
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    ||||||||| ||||| ||||| |||| |||||||||||||||||||| |||   |||||| ||||||||||||||||||||    
T  26933405 agagaattgatgttcgcacgtgtagtttggttgtgccacacgagtaaattaatcaaatgctcttcggtagtaaactgtcga 26933325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 39773362 - 39773413
Alignment:
Q  230 tatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  39773362 tatggctgtgccacacgagtaagttacggaaatgtccttcggtagtaaactg 39773413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 49090381 - 49090456
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  49090381 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 49090456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 1309252 - 1309178
Alignment:
Q  207 agaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| |||||| |||||||||||||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  1309252 agaattgctgctcccacatatagtatggttgtgccacacgagtaaaatacaaaaatgcccttcggcagttaactg 1309178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 1089723 - 1089658
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||| |||||||||||||    
T  1089723 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaaaatgcccttcgg 1089658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 13182239 - 13182158
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||| ||||| ||| |||||||||    
T  13182239 aagagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcctttcggcagttaactgtcga 13182158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 49096490 - 49096425
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||  |||  |||||||||||||    
T  49096490 gagaattgctgttcccacatatagtttggttgtgccacacgagtaaaataccaaaatgcccttcgg 49096425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 6181930 - 6181855
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  6181930 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 6181855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 9893399 - 9893328
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||| |||||||||| |||||||||| |||||  |||| ||||||||||||| ||| |||||    
T  9893399 attgctgttcccacatatagtatggctgtgccacacaagtaaaatacgaaaatgcccttcggcagttaactg 9893328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 31421640 - 31421715
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||| ||| |||||||||| |||||||||| |||||  |||| ||||||||||||| ||| |||||    
T  31421640 gagaattgctgttctcacatatagtatggctgtgccacaccagtaaaatacgaaaatgcccttcggcagttaactg 31421715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 46253421 - 46253496
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||| |||||||||| |||||| |||||||||||||||||||| ||||  |||||||| |||| ||| |||||    
T  46253421 gagaattactgttcccacatatagtttggttgtgccacacgagtaaattactcaaatgcccatcggcagttaactg 46253496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 30723054 - 30723124
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagt 275  Q
    ||||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||||||    
T  30723054 agagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcggtagt 30723124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 1087794 - 1087859
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||| |||||||||  |||||  |||| |||||||||||||    
T  1087794 gagaattgctgttcccacatatagtatggctgtgccacatcagtaaaatacgaaaatgcccttcgg 1087859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 49566584 - 49566507
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  49566584 ttgctgttcccacatatagtatggttgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 49566507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 13173168 - 13173232
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcg 270  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||    
T  13173168 gagaattgatgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcg 13173232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 49164997 - 49165054
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcc 265  Q
    |||||||||||||||||  |||||||||||||||||||||||||||  |||| |||||||    
T  49164997 gagaattgctgttccca--tatagtatggttgtgccacacgagtaaaatacgaaaatgcc 49165054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 41801078 - 41801031
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||    
T  41801078 aagagaattgctgttcccacatatagtatggctgtgtcacacgagtaa 41801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 55588423 - 55588347
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| | | || ||| | |||||||||||||| ||||  ||||||||||||| ||| |||||    
T  55588423 agagaattgctgttcccacatttggtttggctatgccacacgagtaatttacccaaatgcccttcggcagttaactg 55588347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 3408379 - 3408304
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| | | || ||||||| |||||||||||| ||||  ||||||||||||  |||||||||    
T  3408379 gagaattgttgttcccacatttggtttggttgtaccacacgagtaaattactcaaatgcccttcgacagtaaactg 3408304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 21023026 - 21022951
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||||||| |||| ||| |||||    
T  21023026 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccctcggcagttaactg 21022951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 54633744 - 54633811
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||||| | | || ||  ||||||||||||||||  |||| |||||||||||||    
T  54633744 aagagaattgctgttcccacatgttgtttgactgtgccacacgagtaaaatacgaaaatgcccttcgg 54633811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 6181808 - 6181762
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  6181808 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 6181762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 7485802 - 7485720
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    ||||||||||| ||||||||| | | || ||| | |||||||||||||| ||||  |||||||| |||| ||| |||||||||    
T  7485802 gaagagaattgttgttcccacatttggtttggctatgccacacgagtaatttacccaaatgcccctcggcagttaactgtcga 7485720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 40358297 - 40358251
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  40358297 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 40358251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 41793264 - 41793310
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    ||||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  41793264 agagaattgctgttcccacatatagtttggctgtgccatacgagtaa 41793310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 41800954 - 41800908
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  41800954 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 41800908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 9893273 - 9893236
Alignment:
Q  277 aactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  9893273 aactgccgaggaaaactgaacataaccagaacgcagaa 9893236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 26792383 - 26792318
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||| ||||  |||||||||||||    
T  26792383 gagaattgttgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccttcgg 26792318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 37562999 - 37563064
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| |||| |||||||||||  |||| |||||||||||||    
T  37562999 gagaattgctgttcccacatgttgtttggctgtgtcacacgagtaaaatacgaaaatgcccttcgg 37563064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 49169236 - 49169171
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| ||||||||||||||||  |||| ||||| |||||||    
T  49169236 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgtccttcgg 49169171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 55587291 - 55587368
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| ||||||||| | | || ||| | |||||||||||||| ||||  ||||||||||||| ||| |||||    
T  55587291 aagagaattgttgttcccacatttggtttggctatgccacacgagtaatttacccaaatgcccttcggcagttaactg 55587368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 1089601 - 1089553
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||||| ||||||    
T  1089601 tcggtagttaactgccgaggaaatctggacataaccagaatgtagaacc 1089553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 1309131 - 1309083
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  1309131 tcggtagttaactgccgaggaaatctggacataaccagaacgcagaacc 1309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 16473791 - 16473743
Alignment:
Q  233 ggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||  ||||| ||||||||||||| ||| |||||    
T  16473791 ggttgtgccacacgagtactttacgaaaatgcccttcggcagttaactg 16473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 37563297 - 37563249
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| ||||||||||| |||||||||||||  |||||||    
T  37563297 tcggtagttaactgccgaggaaaactcaacataaccagaacccagaacc 37563249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 54634032 - 54633984
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| ||||||||||| |||||||||||||  |||||||    
T  54634032 tcggtagttaactgccgaggaaaactcaacataaccagaacccagaacc 54633984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 184691 - 184616
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  184691 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 184616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 36678068 - 36677993
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36678068 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 36677993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 2416134 - 2416245
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaactgaacataac 302  Q
    ||||||||||| ||||||||| |||||||||| |||||||||| |||||  |||  ||||| ||||||  ||| ||||| ||||||||||||||||||||    
T  2416134 gaagagaattgttgttcccacatatagtatggctgtgccacacaagtaaaataccaaaatgtccttcgacagttaactgccgaggaaaactgaacataac 2416233  T
Q  303 cagaatgcagaa 314  Q
    ||||| ||||||    
T  2416234 cagaacgcagaa 2416245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 22014574 - 22014499
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22014574 gagaattgctcttcgcacgtatggtatggctgtgccacacgagtaaattacggaaatgcccttcggtagtaaactg 22014499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 1052491 - 1052567
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||  |||| ||||||||||||||||| |||||    
T  1052491 agagaattgctgttcccacatatagtatggatgtgccacaccagtaaaatacgaaaatgcccttcggtagttaactg 1052567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 489765 - 489686
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||||||    
T  489765 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatactaaaatgcccttcggcagttaactgtcga 489686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 15036840 - 15036769
Alignment:
Q  207 agaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaa 278  Q
    ||||||| |||||||||  ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  15036840 agaattgttgttcccacacatagtttggctgtgccacacgagtaaattacgcaaatgcccttcggtagtaaa 15036769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 15030817 - 15030893
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || ||| |||||||||||||||| ||||  |||||||||||||||||||||||    
T  15030817 agagaattgttgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccttcggtagtaaactg 15030893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 26659391 - 26659463
Alignment:
Q  209 aattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||| |||||||||| |||||||||| |||||  |||| ||||||||||||| ||| |||||    
T  26659391 aattgctgttcccacatatagtatggctgtgccacaccagtaaaatacgaaaatgcccttcggcagttaactg 26659463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 45066501 - 45066425
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || ||| |||||||||||||||| ||||  |||||||||||||||||||||||    
T  45066501 agagaattgttgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccttcggtagtaaactg 45066425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 23022426 - 23022347
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||| ||||||||| |||||||||| |||||||||  |||||  |||| ||||||||||||| ||| |||||||||    
T  23022426 gagaattgttgttcccacatatagtatggctgtgccacatcagtaaaatacgaaaatgcccttcggcagttaactgtcga 23022347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 42485677 - 42485598
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  ||   ||||| ||||||| ||| |||||||||    
T  42485677 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatatcaaaatgtccttcggcagttaactgtcga 42485598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 22519734 - 22519669
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||  |||  |||||||||||||    
T  22519734 gagaattactgttcccacatatagtttggttgtgccacacgagtaaaataccaaaatgcccttcgg 22519669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 25674 - 25598
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||  ||   ||||||||||||| ||| |||||    
T  25674 agagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatatcaaaatgcccttcggcagttaactg 25598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 915773 - 915686
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaact 293  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||| ||||  |||| |||||||  ||| |||||||||||||||||    
T  915773 gagaattgttgttcccacttttggtttggctgtgccacacgagtaaattactcaaatacccttcgacagttaactgtcgaggaaaact 915686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 22510486 - 22510557
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| ||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  22510486 attgctgttctcacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 22510557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 45064226 - 45064288
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccctt 268  Q
    ||||||||||||||||| || |||  |||||||||||||||||||| ||||  ||||||||||    
T  45064226 gagaattgctgttcccaggtttagattggttgtgccacacgagtaaattactcaaatgccctt 45064288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 483721 - 483782
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||| ||||||||| |||||| ||||||||||||||||||||  |||  |||||||||||||    
T  483721 attgttgttcccacatatagtttggttgtgccacacgagtaaaataccaaaatgcccttcgg 483782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 22014180 - 22014245
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  22014180 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 22014245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 30305678 - 30305601
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  30305678 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 30305601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 32379056 - 32378979
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  32379056 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 32378979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 32433011 - 32432934
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  32433011 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 32432934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 32583986 - 32584066
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    ||||||||||||||||||| | || | | | |||||||||||||||| ||||  |||| ||| |||||||| |||||||||    
T  32583986 agagaattgctgttcccacttttactttagctgtgccacacgagtaaattactcaaatacccctcggtagttaactgtcga 32584066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 28617503 - 28617578
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||| |||||||| ||| |||||    
T  28617503 gagaattgctgttcccacttttggtttggctgtgccacacgagtaaattactcaaatacccttcggcagttaactg 28617578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 184309 - 184374
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  184309 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 184374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 23018619 - 23018684
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||| |||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  23018619 gagaattgctgtttccacatcttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 23018684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 36677646 - 36677711
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  36677646 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 36677711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 184569 - 184521
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| ||||||||||| |||||||||||||  |||||||    
T  184569 tcggtagttaactgccgaggaaaactcaacataaccagaacccagaacc 184521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 489646 - 489598
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  489646 tcggtagttaactgccgaggaaatctggacataaccagaacgcagaacc 489598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 28618575 - 28618499
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| | | || ||| | |||||||| ||||| ||||  ||||||||||||| ||| |||||    
T  28618575 agagaattgctgttcccacatttggtttggctatgccacacaagtaatttacccaaatgcccttcggcagttaactg 28618499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 10098256 - 10098181
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10098256 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 10098181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 42508166 - 42508091
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  42508166 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacggaaatgcccttcggtagtaaactg 42508091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 15074367 - 15074292
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||    
T  15074367 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaaaatgcccttcggtagtaaactg 15074292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 41880448 - 41880522
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||    
T  41880448 gagaattgttgttcccacatatagtatggttgtgccacacgagtaaaatacgaaaatgcccttcggcagttaact 41880522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 18105305 - 18105382
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| ||||||||| ||||||||||  || ||||||||||||  |||||||||| |||||||||||||||||    
T  18105305 aagagaattgttgttcccacatatagtatggccgtaccacacgagtaaaatacggaaatgtccttcggtagtaaactg 18105382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 20564007 - 20564072
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||  |||  |||||||||||||    
T  20564007 gagaattgctgttcccacatatagtatggttgtgccatacgagtaaaataccaaaatgcccttcgg 20564072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 35610554 - 35610479
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||  |||| ||||||| ||||| ||| |||||    
T  35610554 gagaattgctgttcccacatatagtatggctgtgccacaccagtaaaatacgaaaatgccattcggcagttaactg 35610479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 40141361 - 40141296
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagt 275  Q
    |||| ||||||||| |||||| ||| |||||||||||||||| ||||  |||||||||||||||||    
T  40141361 attgttgttcccacatatagtttggctgtgccacacgagtaaattactcaaatgcccttcggtagt 40141296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 48403304 - 48403381
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||| |||||||||||||| |||||||||| |||||||||| |||||  |||  ||||||||||||| ||| |||||    
T  48403304 aagagtattgctgttcccacatatagtatggctgtgccacaccagtaaaatacaaaaatgcccttcggcagttaactg 48403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 618864 - 618808
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaat 262  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||| ||||| ||||    
T  618864 gagaattgctcttcccacatatagtatggctgtgccacacgagtaatttacgcaaat 618808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 7975749 - 7975673
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || |||||||||||||||||||  ||||| ||||| ||||||| |||||||||    
T  7975749 agagaattgttgttcccacatttggtttggttgtgccacacgagtactttacgaaaatgtccttcggcagtaaactg 7975673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 45763313 - 45763395
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    |||| ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  45763313 gagatttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 45763395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 30786485 - 30786562
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  30786485 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 30786562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 43032912 - 43032989
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| | ||| ||||| |||| |||| |||||||| ||||| |||||    
T  43032912 ttgctgttcccacatatagtatggctgtgccacaccaataatttacgcaaataccctctcggtagttaactgccgagg 43032989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 43624276 - 43624203
Alignment:
Q  215 tgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  43624276 tgttcccacatatagtatggttgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 43624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 603710 - 603778
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||||||||||| | | || ||| ||||||||||||||||  |||  |||||||||||||    
T  603710 gaagagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaataccaaaatgcccttcgg 603778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 15074245 - 15074197
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| |||||||||||||| ||| |||||||||||| ||||||||    
T  15074245 tcggtagttaactgtcgaggaaatctggacataaccagaacgcagaacc 15074197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 46907473 - 46907549
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| | | || ||| | |||||||||||||| ||||  ||||||||||||| ||| |||||    
T  46907473 agagaattgctgttcccacatttggtttggctatgccacacgagtaaattactcaaatgcccttcggcagttaactg 46907549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 18109913 - 18109834
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||| ||||||||| | | || ||| ||||| |||||||||| |||   ||||||||||||| |||||||||||||    
T  18109913 gagaattgttgttcccacatttggtttggctgtgctacacgagtaaattattcaaatgcccttcggcagtaaactgtcga 18109834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 20566500 - 20566453
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  20566500 aagagaattgttgttcccacatatagtttggctgtgccacacgagtaa 20566453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 27656973 - 27657048
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || |||||||||||||||||||| |||   |||||||| |||| ||| |||||    
T  27656973 gagaattgctgttcccacatttggtttggttgtgccacacgagtaaattattcaaatgcccctcggcagttaactg 27657048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 7004 - 7078
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||||||| |||| ||| ||||    
T  7004 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaattactcaaatgcccctcggcagttaact 7078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 17465730 - 17465684
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  17465730 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 17465684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 17587484 - 17587530
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  17587484 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 17587530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 10098267 - 10098312
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  10098267 gagaattgttgttcccacatatagtttggctgtgccacacgagtaa 10098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 10524497 - 10524416
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||| ||||||||| | | || ||| |||| ||||||||||| ||||  |||||||| |||| ||| |||||||||    
T  10524497 aagagaattgttgttcccacatttggtttggctgtgtcacacgagtaaattactcaaatgcccctcggcagttaactgtcga 10524416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 12210730 - 12210653
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| | | || ||| ||||||| |||||||| ||||  |||||||| |||| ||| |||||    
T  12210730 aagagaattgctgttcccacatttggtttggctgtgccatacgagtaaattactcaaatgcccctcggcagttaactg 12210653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 9371406 - 9371358
Alignment:
Q  266 cttcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||| ||| ||||| ||||||||||||| ||||||||||| ||||||    
T  9371406 cttcggcagttaactgccgaggaaaactgatcataaccagaacgcagaa 9371358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 9371527 - 9371451
Alignment:
Q  206 gagaattgctgttcccacgtatag-tatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| ||||| |||||||||||||||| |||||  |||  |||||||||| || ||| |||||    
T  9371527 gagaattgttgttcccacatataggtatggttgtgccacacaagtaaaataccaaaatgccctttggcagttaactg 9371451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 13921403 - 13921327
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || |||||||||||||||||||| ||||  |||||| | |||| ||| |||||    
T  13921403 agagaattgttgttcccacatttggtttggttgtgccacacgagtaaattactcaaatgctcctcggcagttaactg 13921327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 1835084 - 1835159
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1835084 gagaattgctgttcccacatatggtatggctgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 1835159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 41844503 - 41844431
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaa 278  Q
    |||||||| |||||| || ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  41844503 gagaattgttgttcctacatatggtatggctgtgccacacgagtaagttacggaaatgcctttcggtagtaaa 41844431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 16444542 - 16444617
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  16444542 gagaattgctgttcccacatatagtatggttgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 16444617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 35743352 - 35743425
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatg-cccttcggtagtaaa 278  Q
    |||||||| |||| | || |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  35743352 gagaattgttgttgctacatatagtatggctgtgccacacgagtaagttacggaaatgccccttcggtagtaaa 35743425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 42904323 - 42904246
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||  |||| ||||||||||||| ||| |||||    
T  42904323 aagagaattgctgttcccacatatagtatggctgtgccacaccagtaaaatacgaaaatgcccttcggcagttaactg 42904246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 46388890 - 46388967
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  46388890 aagagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 46388967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 50481522 - 50481457
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||  |||| |||||||||||||    
T  50481522 gagaattgctgttcccacatatagtatggttgtgccacaccagtaaaatacgaaaatgcccttcgg 50481457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 34045342 - 34045417
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  34045342 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 34045417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 29008820 - 29008894
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||| ||||||||||||| ||| ||||    
T  29008820 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaaaatgcccttcggcagttaact 29008894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 2968064 - 2967999
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  |||||||||||||    
T  2968064 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcgg 2967999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 46702164 - 46702119
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  46702164 gagaattgctgttcccacatatagtatggttgtgccacacgagtaa 46702119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 3975664 - 3975745
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||| ||| ||||| | | || ||| |||||||||||||||  ||||| ||||||||||||| |||||||||||||    
T  3975664 aagagaattgttgtacccacatttggtttggctgtgccacacgagtactttacgaaaatgcccttcggcagtaaactgtcga 3975745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 30947788 - 30947711
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  30947788 ttgctgttcccacatatagtatggttgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 30947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 49144595 - 49144530
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||  |||  |||||||||||||    
T  49144595 gagaattgctgttcccacatatagtatggctgtgtcacacgagtaaaataccaaaatgcccttcgg 49144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 34051486 - 34051440
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  34051486 agagaattgctgttcccacatatagtttggctgtgccacacgagtaa 34051440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 2950267 - 2950312
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||    
T  2950267 gagaattgctgttcccacatatagtttggttgtgtcacacgagtaa 2950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 4008463 - 4008386
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| | | || |||  ||||||||||||||  ||||  ||||||||||||| |||||||||    
T  4008463 aagagaattgctgttcccacatttggtttggccgtgccacacgagtattttacaaaaatgcccttcggcagtaaactg 4008386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 8161104 - 8161047
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccctt 268  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||||    
T  8161104 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctt 8161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 9426565 - 9426630
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||||||| ||||||||||||  |||| |||||||||||||    
T  9426565 gagaattgctgttcccacatgttgtttggttgtaccacacgagtaaaatacgaaaatgcccttcgg 9426630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 46697645 - 46697710
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  46697645 gagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 46697710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 54386065 - 54386129
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccctt 268  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||||||||  |||  ||||||||||    
T  54386065 aagagaattgctcttctcacatatagtatggctgtgccacacgagtaaaataccaaaatgccctt 54386129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 3502036 - 3501969
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||| ||||||||| | | || ||||||||||||||||||||  |||| || ||||||||||    
T  3502036 aagagaattgttgttcccacatgttgtttggttgtgccacacgagtaaaatacgaaactgcccttcgg 3501969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 11249662 - 11249587
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | || | ||| |||||||||||||||| ||||  |||| |||||||| ||| |||||    
T  11249662 gagaattgctgttcccacttttactttggctgtgccacacgagtaaattactcaaatacccttcggcagttaactg 11249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 35743458 - 35743497
Alignment:
Q  277 aactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  35743458 aactgccgaggaaaactgaacataaccagaacgcagaacc 35743497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 1293312 - 1293390
Alignment:
Q  207 agaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    ||||||||||||||||| | |  | |||||||||||||  | ||  ||||| ||||||||||||| |||||||||||||    
T  1293312 agaattgctgttcccacatttgctttggttgtgccacataaatactttacgaaaatgcccttcggcagtaaactgtcga 1293390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 2967942 - 2967896
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  2967942 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 2967896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 46389014 - 46389060
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  46389014 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 46389060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 46702042 - 46701996
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  46702042 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 46701996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 49144473 - 49144427
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  49144473 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 49144427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 54392168 - 54392122
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||| |||||||||||||| |||||| ||| ||||||||||||||||    
T  54392168 agagtattgctgttcccacatatagtttggctgtgccacacgagtaa 54392122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 19988392 - 19988469
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||| ||| | | || ||| |||||||||||||||| ||||  |||||||| |||| ||| |||||    
T  19988392 aagagaattgctgttctcacatttggtttggctgtgccacacgagtaaattactcaaatgcccctcggcagttaactg 19988469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 35743719 - 35743654
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| ||||||||||||||||  |||| ||||||| |||||    
T  35743719 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgccattcgg 35743654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 46406763 - 46406718
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| ||| |||| |||||||||||    
T  46406763 gagaattgctgttcccacatatagtttggctgtgtcacacgagtaa 46406718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 49138515 - 49138560
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| ||| ||||||||| ||||||    
T  49138515 gagaattgctgttcccacatatagtttggctgtgccacatgagtaa 49138560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 1835464 - 1835401
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||||||||| |   || ||||||||||||||||||||  |||| ||||||| |||||    
T  1835464 agagaattgctgttcccacat---gtttggttgtgccacacgagtaaaatacgaaaatgcctttcgg 1835401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 3948667 - 3948707
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    ||||||||||||| |||||||||| |||||||||| |||||    
T  3948667 ttgctgttcccacatatagtatggctgtgccacaccagtaa 3948707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 41844381 - 41844333
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| ||||||||||| |||||||||||||  |||||||    
T  41844381 tcggtagttaactgccgaggaaaactcaacataaccagaacccagaacc 41844333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 52387746 - 52387798
Alignment:
Q  233 ggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||||| |||||  ||||| ||||||||||||| ||| |||||||||    
T  52387746 ggttgtgccacatgagtattttacgaaaatgcccttcggcagttaactgtcga 52387798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 44100636 - 44100711
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  44100636 gagaattgctgttctcacatatggtatggctgtgccacatgagtaagttacggaaatgcccttcggtagtaaactg 44100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 21998148 - 21998217
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagt 275  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| ||||  |||||||||||||||||    
T  21998148 gagaattgatgttcccacatatagtttggttgtgccacacgagtaaattactcaaatgcccttcggtagt 21998217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 28468575 - 28468650
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||  |||| |||| ||||||| ||||||||||    
T  28468575 gagaattgttgttcccacgtatagtttggctgtgccacacgagtaaaatacgcaaatacccttcgatagtaaactg 28468650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 45428550 - 45428625
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||| ||||| |||| |||||||||||  ||||||||| ||||||||||||||||||    
T  45428550 gagaattgttgttcccacatataatatggctgtgtcacacgagtaaaatacggaaatacccttcggtagtaaactg 45428625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 17420502 - 17420567
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  |||||||||||||    
T  17420502 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcgg 17420567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 42505903 - 42505826
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||  |||  |||| |||||||| ||| |||||    
T  42505903 aagagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatacccttcggcagttaactg 42505826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 22003537 - 22003465
Alignment:
Q  209 aattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||| | | || ||| |||||||||||||||| ||||  |||||||||||||||||||||||    
T  22003537 aattgctgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccttcggtagtaaactg 22003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 30497089 - 30497013
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  30497089 agagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 30497013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 38945696 - 38945752
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaat 262  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||    
T  38945696 gagaattgctgttcccacatatagtatggctgtgccacacgagtaatttacgcaaat 38945752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 39800792 - 39800716
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||  ||   ||||||||||||| ||| |||||    
T  39800792 agagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatatcaaaatgcccttcggcagttaactg 39800716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 39793897 - 39793972
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  ||   ||||||||||||| ||| |||||    
T  39793897 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatatcaaaatgcccttcggcagttaactg 39793972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 43978474 - 43978545
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  43978474 attgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 43978545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 15831061 - 15831135
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||| |||| |||||||| ||| ||||    
T  15831061 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaaaattcccttcggcagttaact 15831135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 3940864 - 3940793
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  3940864 attgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 3940793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 30493291 - 30493358
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  30493291 aagagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 30493358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 39947534 - 39947613
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||| ||||||||| | | || | | |||||||||||||||  ||||| |||| ||||||||||||||||||||||    
T  39947534 gagaattgttgttcccacatttggttttgctgtgccacacgagtactttacgaaaatacccttcggtagtaaactgtcga 39947613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 5352020 - 5352066
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  5352020 tcggtagttaactgccgaggaaaactgaacataaccagaacgcagaa 5352066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 5355671 - 5355605
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  5355671 agagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 5355605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 42499687 - 42499749
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccctt 268  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||  |||  ||||||||||    
T  42499687 gagaattgctgttcccacatatagtttggctgtgccacacgagtaaaataccaaaatgccctt 42499749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 213587 - 213510
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  213587 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 213510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 10624600 - 10624523
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  10624600 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 10624523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 3085969 - 3086021
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttac 256  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||| ||||    
T  3085969 aagagaattgttgttcccacatttagtttggttgtgccacacgagtaaattac 3086021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 29074142 - 29074066
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || |||||||||||||||||||| ||||  |||||||| |||| ||| |||||    
T  29074142 agagaattgttgttcccacatttggtttggttgtgccacacgagtaaattactcaaatgcccctcggcagttaactg 29074066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 43539873 - 43539801
Alignment:
Q  209 aattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||  | || ||||| ||||||| ||| |||||    
T  43539873 aattgttgttcccacatatagtatggttgtgccacaccagtaaaatgcgaaaatgtccttcggcagttaactg 43539801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 17426539 - 17426492
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  17426539 aagagaattgttgttcccacatatagtttggctgtgccacacgagtaa 17426492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 20937832 - 20937907
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||| ||||  ||||||||||||| ||| |||||    
T  20937832 gagaattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactg 20937907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 20951184 - 20951101
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaa 289  Q
    |||||||||||||||||| | |  || || |||||||||| ||||| ||||  ||||||||||||| ||| ||||| |||||||    
T  20951184 gagaattgctgttcccacatgtgataaggctgtgccacaccagtaaattacctaaatgcccttcggcagttaactgccgaggaa 20951101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 21998253 - 21998292
Alignment:
Q  277 aactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  21998253 aactgccgaggaaaactgaacataaccagaacgcagaacc 21998292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 26543238 - 26543317
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||  ||||| ||||| ||||||| | |||||||||||    
T  26543238 gagaattgttgttcccacatttggtttggctgtgccacacgagtactttacgaaaatgtccttcggcactaaactgtcga 26543317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 43619281 - 43619206
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| |||   ||||||||||||| ||| |||||    
T  43619281 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaattaatcaaatgcccttcggcagttaactg 43619206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 3940746 - 3940700
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  3940746 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 3940700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 15831183 - 15831229
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  15831183 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 15831229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 20937954 - 20938000
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  20937954 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 20938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 28477205 - 28477163
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgag 248  Q
    |||||||| ||||||||| |||||| |||||||||||||||||    
T  28477205 gagaattgttgttcccacatatagtttggttgtgccacacgag 28477163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 3935768 - 3935809
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||| |||||| ||| ||||||||||||||||    
T  3935768 attgctgttcccacatatagtttggctgtgccacacgagtaa 3935809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 5334515 - 5334592
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| ||||||| || |||||||||| ||||| ||||| ||||  ||| |||| ||| |||||||||||    
T  5334515 ttgctgttcccacatatagtagggctgtgccacaccagtaatttacgcaaatatcctctcggcagttaactgtcgagg 5334592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 18003407 - 18003330
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| ||||||| || ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  18003407 ttgctgttcccacatatagtatggctgtgccaaaccagtaatttacgcaaataccctctcggcagttaactgccgagg 18003330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 5351897 - 5351961
Alignment:
Q  206 gagaattgctgttcccacgtatagtatg-gttgtgccacacgagtaagttacggaaatgcccttc 269  Q
    |||||||| ||||||||| ||||||||| | ||||||||||||||||  |||  |||||||||||    
T  5351897 gagaattgttgttcccacatatagtatgcgctgtgccacacgagtaaaataccaaaatgcccttc 5351961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 10424774 - 10424834
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccc 266  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  ||||||||    
T  10424774 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgccc 10424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 36509901 - 36509993
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaactgaa 296  Q
    |||||||||| ||||||||| | | || ||| | || ||||||||||| ||||  ||||| || |||| ||||||||  ||||||||||||||    
T  36509901 aagagaattgttgttcccacatttggtttggctatgtcacacgagtaaattactcaaatgtccctcggcagtaaactaccgaggaaaactgaa 36509993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 42505779 - 42505731
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  42505779 tcggtagttaactgccgaggaaatctggacataaccagaacgcagaacc 42505731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 43312665 - 43312741
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || ||| ||| |||||||| ||  ||||| ||||||||||||| |||||||||    
T  43312665 agagaattgttgttcccacatttggtttggctgtaccacacgaatattttacgaaaatgcccttcggcagtaaactg 43312741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 44621258 - 44621181
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||| |||||    
T  44621258 aagagaattgttgttcccacgtatagtatggttgtgccacacgagtaaaatacgaaaatgcccttcggcagttaactg 44621181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 13629338 - 13629413
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  13629338 gagaattgctgttcccacatatagtatggttgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 13629413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 19924689 - 19924764
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  19924689 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 19924764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 8473717 - 8473791
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||||  |||| ||||||||||||| ||| ||||    
T  8473717 gagaattactgttcccacatatagtatggatgtgccacacgagtaaaatacgaaaatgcccttcggcagttaact 8473791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 3732492 - 3732417
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  ||||||| ||||| ||| |||||    
T  3732492 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgccattcggcagttaactg 3732417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 26875627 - 26875702
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||| |||||||||||||||||| |||||||||| |||||  |||  ||||||||||||| ||| |||||    
T  26875627 gagaattgctattcccacgtatagtatggctgtgccacaccagtaaaatacaaaaatgcccttcggcagttaactg 26875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 30889995 - 30890070
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  30889995 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 30890070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 38633292 - 38633217
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||||| ||||  ||||||| |||| ||||||||||    
T  38633292 gagaattgttgttcccacatatagtttggctgtgccacacgagtaaattactcaaatgcctttcgatagtaaactg 38633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 43012783 - 43012693
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaactgaa 296  Q
    |||||||||| ||||||| | | || ||| | |||||||||||||| ||||  ||||||| ||||| |||||||| |||||||||||||||    
T  43012783 gagaattgctcttcccacatttggtttggctatgccacacgagtaaattactcaaatgcctttcggcagtaaactatcgaggaaaactgaa 43012693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 26879434 - 26879369
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| |||||||||| |||||||||| |||||  |||| |||||||||||||    
T  26879434 gagaattgttgttcccacatatagtatggctgtgccacaccagtaaaatacgaaaatgcccttcgg 26879369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 22397754 - 22397829
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||  |||  |||| |||||||| ||| |||||    
T  22397754 gagaattgttgttcccacgtatagtaaggctgtgccacacgagtaaaataccaaaatacccttcggcagttaactg 22397829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 47652662 - 47652749
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaact 293  Q
    |||||||||||||||||||| | || ||| |||| ||||||||||| ||||  ||||| || |||| ||| ||||| |||||||||||    
T  47652662 gagaattgctgttcccacgtttggtttggctgtgtcacacgagtaaattactcaaatgtccctcggcagttaactgccgaggaaaact 47652749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 43011762 - 43011852
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaactgaa 296  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||| ||||  |||| ||| |||| ||| ||||| ||||||||||||||    
T  43011762 gagaattgttgttcccacttttggtttggctgtgccacacgagtaaattactcaaatacccctcggcagttaactgccgaggaaaactgaa 43011852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 586745 - 586668
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||| |||||||| ||| |||||    
T  586745 aagagaattgctgttcccacttttggtttggctgtgccacacgagtaaattactcaaatacccttcggcagttaactg 586668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 3983025 - 3983102
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  3983025 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 3983102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 8548808 - 8548743
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  8548808 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 8548743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 31945996 - 31945919
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  31945996 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 31945919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 38776261 - 38776184
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| |||| ||| ||||| |||||    
T  38776261 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccctctcggcagttaactgccgagg 38776184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 3728666 - 3728734
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||||||||||| | | || ||| ||||||||||||||||  |||| |||||| ||||||    
T  3728666 gaagagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaaaatgctcttcgg 3728734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 3948539 - 3948460
Alignment:
Q  211 ttgctgttcccacg--tatagtatggttgtgccacacgagtaagttacggaaatgccct-tcggtagtaaactgtcgagg 287  Q
    |||||||||||||   ||||||||||||||||||||| ||||| ||||| |||| |||| |||||||| ||||| |||||    
T  3948539 ttgctgttcccacacatatagtatggttgtgccacaccagtaatttacgcaaataccctctcggtagttaactgccgagg 3948460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 20349396 - 20349452
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct 267  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| ||||    
T  20349396 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccct 20349452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 29622441 - 29622393
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||||    
T  29622441 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaacc 29622393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 52801795 - 52801826
Alignment:
Q  85 agagagaaacggcaagaccaaatgagattgaa 116  Q
    ||||||||||||||||||||||||||||||||    
T  52801795 agagagaaacggcaagaccaaatgagattgaa 52801826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 38632446 - 38632512
Alignment:
Q  226 atagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaac 292  Q
    ||||| ||| ||||||||| |||||| ||||  ||||||||||||||||| ||||| ||| ||||||    
T  38632446 atagtttggctgtgccacaggagtaaattactcaaatgcccttcggtagttaactgccgaagaaaac 38632512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 585589 - 585654
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| | |||| ||| | ||||||| |||||| ||||  |||||||||||||    
T  585589 gagaattgctgttcccacatttagtttggctatgccacaggagtaatttacccaaatgcccttcgg 585654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 2365300 - 2365337
Alignment:
Q  277 aactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  2365300 aactgccgaggaaaactgaacataaccagaacgcagaa 2365337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 15051487 - 15051422
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||| ||||||| | | || |||||||| |||||||||||  |||| |||||||||||||    
T  15051487 gagaattgctcttcccacatgttgtttggttgtgtcacacgagtaaaatacgaaaatgcccttcgg 15051422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 30195522 - 30195446
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgt 282  Q
    |||||||| ||||||||| | | || ||| | |||||||||||||| ||||  ||||||||||||| ||| ||||||    
T  30195522 gagaattgttgttcccacatttggtttggctatgccacacgagtaaattactcaaatgcccttcggcagttaactgt 30195446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 30890117 - 30890165
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  30890117 tcggtagttaactgccgaggaaatctggacataaccagaacgcagaacc 30890165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 26711983 - 26712057
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| ||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26711983 gagaattgctgttcccacatatggta-ggctgtgccaaacgagtaagttacggaaatgcccttcggtagtaaactg 26712057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 30829786 - 30829726
Alignment:
Q  210 attgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||    
T  30829786 attgctgttcccacatatagtatggttgtgccacacgagtaaaatacgaaaatgcccttcg 30829726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 11688046 - 11688127
Alignment:
Q  204 aagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||||||    
T  11688046 aagagaattgttgttcccacatacagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactgtcga 11688127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 27616649 - 27616714
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  |||||||||||||    
T  27616649 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcgg 27616714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 18346974 - 18347031
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaat 262  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||| ||||| ||||    
T  18346974 agagaattgttgttcccacatatagtatggttgtgccacatgagtaatttacgcaaat 18347031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 13382562 - 13382638
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || ||| |||||||||||||||| ||||  ||||| |||||||||||||||||    
T  13382562 agagaattgttgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgtccttcggtagtaaactg 13382638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 11694199 - 11694154
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||    
T  11694199 gagaattgctgttcccacatatagtttggctgtgccacacgagtaa 11694154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 1612882 - 1612826
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct 267  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| ||||    
T  1612882 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccct 1612826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 11688168 - 11688216
Alignment:
Q  266 cttcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  11688168 cttcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 11688216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 6761010 - 6760935
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||||||| | |||||| |||||    
T  6761010 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgccccttggtagttaactg 6760935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35096642 - 35096693
Alignment:
Q  242 acacgagtaagttacggaaatgcccttcggtagtaaactgtcgaggaaaact 293  Q
    |||||||||| ||||  ||||||||||||||||| ||||| |||||||||||    
T  35096642 acacgagtaaattactcaaatgcccttcggtagttaactgccgaggaaaact 35096693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 6207233 - 6207167
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||| ||||||| |||||| ||  ||||||||||||||||  |||  |||||||||||||    
T  6207233 agagaattgcttttcccacatatagtttgactgtgccacacgagtaaaataccaaaatgcccttcgg 6207167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 27616771 - 27616817
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  27616771 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 27616817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 30829668 - 30829622
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||||    
T  30829668 tcggcagttaactgccgaggaaaactgaacataaccagaacgcagaa 30829622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 32691085 - 32691145
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccc 266  Q
    |||||||| ||||||||| | | || |||||||||||||| ||||| ||||| ||||||||    
T  32691085 gagaattgttgttcccacatttggtttggttgtgccacacaagtaaattacgcaaatgccc 32691145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 858 - 786
Alignment:
Q  209 aattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||| ||||||||| |||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||    
T  858 aattgttgttcccacatatagtatggctgtgccacatgagtaaaatacggaaatgcccttcggtagtaaactg 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 739 - 691
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||||||| ||||||||| || ||||||||    
T  739 tcggtagttaactgccgaggaaaactggacataaccataacgcagaacc 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 27659874 - 27659949
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | | || ||| |||||||||||||||| ||||  |||||||||||||||||||||||    
T  27659874 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaattactcaaatgcccttcggtagtaaactg 27659949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 11027028 - 11027104
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  11027028 agagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 11027104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 37820986 - 37820930
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaat 262  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  37820986 gagaattgttgttcccacatatagtatggttgtgccacacgagtaaattacgcaaat 37820930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 8580619 - 8580549
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagt 275  Q
    ||||||||||| ||||||| |||||| | | |||||||||||||||| ||||  |||||||||||||||||    
T  8580619 agagaattgctattcccacatatagtttagctgtgccacacgagtaaattactcaaatgcccttcggtagt 8580549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 19041256 - 19041211
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  19041256 gagaattgctgttcccacatatagtatggctgtgccacacgagtaa 19041211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 38860307 - 38860242
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||  |||  |||||||||||||    
T  38860307 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcgg 38860242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 11033602 - 11033526
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||  |||  ||||| ||||||| ||| |||||    
T  11033602 agagaattgctgttcccacatatagtatggctgtgccacatgagtaaaataccaaaatgtccttcggcagttaactg 11033526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 28241943 - 28241893
Alignment:
Q  201 tggaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||| |||||||| ||||||||| |||||||||| ||||||||||||||||    
T  28241943 tggatgagaattgttgttcccacatatagtatggctgtgccacacgagtaa 28241893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 14279788 - 14279844
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct 267  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| ||||    
T  14279788 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccct 14279844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 28238070 - 28238138
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||||||||||| ||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  28238070 gaagagaattgctcttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 28238138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 8574617 - 8574691
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| | | || ||| ||||| |||||||||| ||||  |||||||||||||||||||||||    
T  8574617 gagaattgttgttcccacatttggtttggctgtgc-acacgagtaaattactcaaatgcccttcggtagtaaactg 8574691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 13837658 - 13837733
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||||||||||||| | |  | ||| |||||||||||||||  ||||  ||||||||||||| |||||||||    
T  13837658 gagaattgctgttcccacatttgctttggctgtgccacacgagtactttacaaaaatgcccttcggcagtaaactg 13837733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 38853413 - 38853488
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||| ||  |||||||||| ||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  38853413 gagaattgttgttctcatatatagtatggctgtgccacacgagtaaaataccaaaatgcccttcggcagttaactg 38853488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 19041134 - 19041088
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  19041134 tcggtagttaactgccgaggaaatctgaacataaccagaacgcagaa 19041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 19035139 - 19035184
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| ||  ||||||||||||||||    
T  19035139 gagaattgctgttcccacatatagtttgactgtgccacacgagtaa 19035184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 28241816 - 28241768
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||||||| ||||| |||||||| ||| |||||||||||| ||||||||    
T  28241816 tcggtagttaactgccgaggaaatctggacataaccagaacgcagaacc 28241768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 28876574 - 28876642
Alignment:
Q  203 gaagagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    ||||| ||||| ||||||||| | | || ||| ||||||||||||||||  |||| |||||||||||||    
T  28876574 gaagaaaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaaaatgcccttcgg 28876642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 28876699 - 28876747
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaacc 316  Q
    |||| ||| ||||| |||||||| |||||||||||||||| ||||||||    
T  28876699 tcggcagttaactgccgaggaaatctgaacataaccagaacgcagaacc 28876747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 28886523 - 28886487
Alignment:
Q  215 tgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  28886523 tgttcccacatatagtatggctgtgccacacgagtaa 28886487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 561 - 496
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||  |||| |||||||||||||    
T  561 gagaattgttgttcccacatatagtatggttgtgccacaccagtaaaatacgaaaatgcccttcgg 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 41195 - 41121
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaact 280  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  |||  |||| |||||||| ||| ||||    
T  41195 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatactaaaatacccttcggcagttaact 41121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 11470 - 11424
Alignment:
Q  268 tcggtagtaaactgtcgaggaaaactgaacataaccagaatgcagaa 314  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  11470 tcggcagttaactgtcgaggaaaactgaacataaccagaacgcagaa 11424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 11592 - 11517
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    |||||||| ||||||||| | | || ||| |||||||||||||||| ||||  ||||||||||||| ||| |||||    
T  11592 gagaattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactg 11517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 84481 - 84526
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||    
T  84481 gagaattgctgttcccacatatagtttggctgtgccacacgagtaa 84526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 7351 - 7427
Alignment:
Q  205 agagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactg 281  Q
    ||||||||| ||||||||| | | || ||| |||| ||||||||||  ||||| ||||||||||||| |||||||||    
T  7351 agagaattgttgttcccacatctggtttggctgtgacacacgagtactttacgaaaatgcccttcggcagtaaactg 7427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 11719 - 11775
Alignment:
Q  211 ttgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgccct 267  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| ||||    
T  11719 ttgctgttcccacatatagtatggctgtgccacaccagtaatttacgcaaataccct 11775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 15760 - 15681
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcggtagtaaactgtcga 285  Q
    |||||||| |||| |||| | | || |||||||||||||||||||  ||||| ||||| ||||||| ||| |||||||||    
T  15760 gagaattggtgtttccacatttggtttggttgtgccacacgagtactttacgaaaatgtccttcggcagttaactgtcga 15681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1606 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 100 - 55
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaa 251  Q
    |||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  100 gagaattgttgttcccacatatagtttggctgtgccacacgagtaa 55  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 10587 - 10652
Alignment:
Q  206 gagaattgctgttcccacgtatagtatggttgtgccacacgagtaagttacggaaatgcccttcgg 271  Q
    |||||||| ||||||||| | | || |||||||| ||||||||||| ||||  |||||||||||||    
T  10587 gagaattgttgttcccacatttggtttggttgtgtcacacgagtaaattacttaaatgcccttcgg 10652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University