View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_3 (Length: 522)
Name: NF11092_high_3
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 51181707 - 51181202
Alignment:
| Q |
1 |
attgaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctct |
100 |
Q |
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| T |
51181707 |
attgaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctct |
51181608 |
T |
|
| Q |
101 |
ccttctgatctttcaaccacctacccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagtt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51181607 |
ccttctgatctttcaaccacctccccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagtt |
51181508 |
T |
|
| Q |
201 |
acagattgagcagttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51181507 |
acagattgagcagttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctg |
51181408 |
T |
|
| Q |
301 |
gagaaagtgcttggtgaagtaaaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51181407 |
gagaaagtgcttggtgaagtaaaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattat |
51181308 |
T |
|
| Q |
401 |
ttcttgtgctttatgattatattcatgaaccgtacaagtttaacatgagtagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatct |
500 |
Q |
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| T |
51181307 |
ttcttgtgctttatgattatattcatgaaccgtacaagtttaacatgaatagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatct |
51181208 |
T |
|
| Q |
501 |
gacaac |
506 |
Q |
| |
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|||||| |
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| T |
51181207 |
gacaac |
51181202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 502
Target Start/End: Original strand, 14180972 - 14181459
Alignment:
| Q |
13 |
actgctgcaacagcggcagcaacaccaactacagatactgcggcgtgcaactgagcgttatgagtcctgatttcctgttttttcctctccttctgatctt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14180972 |
actgctgcaacagcggcagcaacaccaactacagatactgtggcgtgcaactgagcattatgagtcctgatttcctgttttttcctctccttctgatctt |
14181071 |
T |
|
| Q |
113 |
tcaaccacctacccgtagtcctccctcttatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagca |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
14181072 |
tcaaccacctacccgtagtcctccctcttattaagctcctgtaaagctgatgagcaaaaatttgcacaaaaaattaacgaaaatagttacagattgagca |
14181171 |
T |
|
| Q |
213 |
gttatctgattataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgctt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14181172 |
tttatctgattataattgatgaatataatcacatgttgaatgcaagataccccatttctcagcaagttttggctggaaaggaattctggagaaagtgctt |
14181271 |
T |
|
| Q |
313 |
ggtgaagtaaaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattatttcttgtgcttt |
412 |
Q |
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|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |
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| T |
14181272 |
ggtgaagtaaaaataaatcctgcatatgaatgattac--tgttatttcatttatatataccaaagatttaatcgctgtgcaaaattatttcttgtgcttt |
14181369 |
T |
|
| Q |
413 |
atgattatattcatgaaccgtacaagtttaacatgagtagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatctga |
502 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
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| T |
14181370 |
atgattatattcatgaaccacacaagtttaacatgagtagtaagtaaagtaaatacctttgtttcgctactgtctcttggcgaaatctga |
14181459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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