View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_30 (Length: 304)
Name: NF11092_high_30
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 4315487 - 4315213
Alignment:
| Q |
19 |
tccttgacaagctttcttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315487 |
tccttgacaagctttcttctcctgaggttgttgacttgatccgtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgt |
4315388 |
T |
|
| Q |
119 |
tgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4315387 |
tgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcaaagatgctgtttattttgctgatgat |
4315288 |
T |
|
| Q |
219 |
cttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctct |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315287 |
cttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctct |
4315213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 4306625 - 4306397
Alignment:
| Q |
19 |
tccttgacaagctttcttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgt |
118 |
Q |
| |
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|||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||| |
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| T |
4306625 |
tcctcgacaggcttgcttctcctgaggttgttgacttgatccgtgggaagaaagttgacgtcaacttggttcaaaggttgaagaacactctttatgctgt |
4306526 |
T |
|
| Q |
119 |
tgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgat |
218 |
Q |
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|||||||||| | || ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
4306525 |
tgaagctgtgttgaacgatgctgaacagaaacagctcaaagactctgctgttatcaaatggcttgatgatctcaaagatgctgtttattttactgatgat |
4306426 |
T |
|
| Q |
219 |
cttctcgaccacatttctaccaaagctgc |
247 |
Q |
| |
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|||||||||||||| |||||||||||||| |
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| T |
4306425 |
cttctcgaccacatctctaccaaagctgc |
4306397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 271
Target Start/End: Original strand, 4253028 - 4253265
Alignment:
| Q |
34 |
cttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgcttaa |
133 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
4253028 |
cttctcctgaggttgttgtcttgatccgtgggaagaaagttgacgtcaatttggtccaaaggttgaagaacactctttatgctgtggaagctgtgtttaa |
4253127 |
T |
|
| Q |
134 |
tgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacatt |
233 |
Q |
| |
|
||| | || || |||||||||||| || ||||| |||||| |||| | |||||||||| || || ||| ||| | |||||||| ||||| ||| ||||| |
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| T |
4253128 |
cgatgcggagcaaaaacagttcaaaaaccctgctattaacagatggatcgatgatctcaaaggtgttgtctatgtagctgatgaccttcttgacaacatt |
4253227 |
T |
|
| Q |
234 |
tctaccaaagctgctactcagaagaacaagcaggtgag |
271 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||||||| |
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| T |
4253228 |
tcaaccaaagctgctacacagaaaaacaagcaggtgag |
4253265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 4309503 - 4309251
Alignment:
| Q |
19 |
tccttgacaagctttcttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgt |
118 |
Q |
| |
|
||||||||| ||| |||||||| ||||| ||||||| ||| |||||| |||||| | |||||||| | ||||||||||| ||||||||||||||||| |
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| T |
4309503 |
tccttgacaggctggcttctcctcaggttcttgacttcatccatgggaaaaaagtttacatcaatttggttcaaaggttgaataacactctttatgctgt |
4309404 |
T |
|
| Q |
119 |
tgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgat |
218 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||| ||| |||||||||| |
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| T |
4309403 |
ggaagctgtgctgaatgatgtggagcagaaacagttcaaagactctgctattaagaaatggctcgatgatctcaaagacgctgtctatgttgctgatgac |
4309304 |
T |
|
| Q |
219 |
cttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgag |
271 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
4309303 |
cttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgag |
4309251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 4245988 - 4246070
Alignment:
| Q |
118 |
ttgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgct |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| | | ||||||| |||| ||||||| |
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|
| T |
4245988 |
ttgaagctgtccttaatgatgctgaacagaaacaactcaaagactctgctgttaacaactagtttgatgacctcaaagatgct |
4246070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 41932433 - 41932662
Alignment:
| Q |
19 |
tccttgacaagctttcttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgt |
118 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932433 |
tccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaagaaagttgacgtcaatttgatccaaaggttgaagaacactctttatgctgt |
41932532 |
T |
|
| Q |
119 |
tgaagctgtgcttaatgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgat |
218 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||| |
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|
| T |
41932533 |
tgaagctgtcttgaatgatgctgaacagaaacagttcaaagactctgctgttaacaaatggctcgatgatctcaaagatgctgtctatgttgctgatgac |
41932632 |
T |
|
| Q |
219 |
cttctcgaccacatttctaccaaagctgct |
248 |
Q |
| |
|
|| | || ||||| ||||| ||||||||| |
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|
| T |
41932633 |
attttggatcacatctctactaaagctgct |
41932662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33549317 - 33549369
Alignment:
| Q |
19 |
tccttgacaagctttcttctcctgaggttgttgacttgatcagtgggaagaaa |
71 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33549317 |
tccttgacatacttacttctcttgaggttgttgacttgatccgtgggaagaaa |
33549369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 33354072 - 33354035
Alignment:
| Q |
34 |
cttctcctgaggttgttgacttgatcagtgggaagaaa |
71 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
33354072 |
cttctcttgaggttgttgacttgatccgtgggaagaaa |
33354035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 34803489 - 34803278
Alignment:
| Q |
33 |
tcttctcctgaggttgttgacttgatcagtgggaagaaagttgccgtcaatttgatccaaaggttgaagaacactctttatgctgttgaagctgtgctta |
132 |
Q |
| |
|
||||||||| || || |||| |||||| |||||||| | |||| ||||||||| | ||| |||||||||| |||| ||||| || |||||||| ||| |
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|
| T |
34803489 |
tcttctcctcagattcttgaattgatccgtgggaagcaggttgatgtcaatttggtacaacggttgaagaatactccatatgcagtagaagctgttcttt |
34803390 |
T |
|
| Q |
133 |
atgatactgaacagaaacagttcaaagactctgctgttaacaaatggcttgatgatctcatagatgctgtttattttgctgatgatcttctcgaccacat |
232 |
Q |
| |
|
||||| | ||| |||||||| |||||||||||||||||||||| ||||| ||||| |||| ||| ||||||||| | |||||||| ||| | || ||||| |
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|
| T |
34803389 |
atgatgcggaatagaaacagatcaaagactctgctgttaacaactggctcgatgacctcaaagacgctgtttatgtagctgatgaccttttggatcacat |
34803290 |
T |
|
| Q |
233 |
ttctaccaaagc |
244 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
34803289 |
ttctactaaagc |
34803278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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