View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11092_high_34 (Length: 292)
Name: NF11092_high_34
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_34 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 38252255 - 38252520
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38252255 |
gacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
38252354 |
T |
|
| Q |
111 |
caacatgcaaaccggaa-ccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaa |
209 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38252355 |
ctacatgcaaaccggaacccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaa |
38252454 |
T |
|
| Q |
210 |
ataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252455 |
ataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
38252520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 43157287 - 43157022
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43157287 |
gacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
43157188 |
T |
|
| Q |
111 |
caacatgcaaaccggaacc-ccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaa |
209 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43157187 |
ctacatgcaaaccggaacccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaa |
43157088 |
T |
|
| Q |
210 |
ataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43157087 |
ataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
43157022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 11474590 - 11474346
Alignment:
| Q |
32 |
aaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaacaacatgcaaaccggaacc-c |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
11474590 |
aaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaactacatgcaaaccggaacccc |
11474491 |
T |
|
| Q |
131 |
cccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntattt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11474490 |
cccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgccccctatgcattcattccattcaaataggttgg-cccccctattt |
11474392 |
T |
|
| Q |
231 |
cctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474391 |
cctacattaataacaacttaaaaattagcatcacgatacttgttga |
11474346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 28245419 - 28245705
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28245419 |
gacagcacactaacaggatccaaaataacattactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
28245518 |
T |
|
| Q |
111 |
caacatgcaaac----------------------cggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgcccc |
188 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245519 |
caacatgcaaacgggaacccccaggcacctgcagcggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgcccc |
28245618 |
T |
|
| Q |
189 |
ctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245619 |
ctatgcattcattccattcaaataggttgg-cccctctatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
28245705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 50019096 - 50019192
Alignment:
| Q |
177 |
cgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgtt |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50019096 |
cgcccgtgccccctatgcattcattccattcaaataggctggcctccc-tattgcctacattaataacaacttaaaaattagaatcacgatacttgtt |
50019192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 10123646 - 10123932
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10123646 |
gacagcacactaacaggatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
10123745 |
T |
|
| Q |
111 |
caacatgcaaac----------------------cggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgcccc |
188 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10123746 |
caacatgcaaaccggaacccccaggcacctgcagcggaaccccccaggtatcaaaccagaaaacttaataacaacaaaaatgcagcaacgccagtgcccc |
10123845 |
T |
|
| Q |
189 |
ctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10123846 |
ctatgcattcattccattcaaataggttgg-cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
10123932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 19307074 - 19307199
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307074 |
gacagcacactaacaggatccaaaataacactactaagtgattttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
19307173 |
T |
|
| Q |
111 |
caacatgcaaaccggaaccccccagg |
136 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
19307174 |
caacatgcaaactggaaccccccagg |
19307199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 19307274 - 19307382
Alignment:
| Q |
167 |
aatgcagcaacgccagtgccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacga |
266 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307274 |
aatgcagcaacgccagtgccccctatgaattcattccattcaaataggttggcccctc-tatttcctacattaataacaacttaaaaattagcatcacga |
19307372 |
T |
|
| Q |
267 |
tacttgttga |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
19307373 |
tacttgttga |
19307382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 22490659 - 22490784
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22490659 |
gacatcacactaacagcagccaaaataacactactaagtggttttaacagcaaaaacacagttcctatgctccaaaaaaccgcgcctgaacagcaaaaaa |
22490758 |
T |
|
| Q |
111 |
caacatgcaaaccggaaccccccagg |
136 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
22490759 |
caaactgcaaaccggaaccccccagg |
22490784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 25382767 - 25382644
Alignment:
| Q |
11 |
gacatcacactaacaagatccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaaccgcgcctgaacagcaaaaaa |
110 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25382767 |
gacagcacactaacaggagccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctctaaaaaaccgcgcctgaacagcaaaaaa |
25382668 |
T |
|
| Q |
111 |
caacatgcaaaccggaacccccca |
134 |
Q |
| |
|
|||| ||||||||| ||||||||| |
|
|
| T |
25382667 |
caacctgcaaaccgaaacccccca |
25382644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 25382550 - 25382460
Alignment:
| Q |
185 |
ccccctatgcattcattccattcaaataggttggnnnnnnntatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382550 |
ccccctatgcattcattccattcaaataggttggcccccc-tatttcctacattaataacaacttaaaaattagcatcacgatacttgttga |
25382460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 48794575 - 48794515
Alignment:
| Q |
30 |
ccaaaataacactactaagtggttttaacagcaaaaacacagttcccatgctccaaaaaac |
90 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48794575 |
ccaaaataacactactaagtggttttaatagcaaaaacacagttcccatgctccaaaaaac |
48794515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 48794334 - 48794291
Alignment:
| Q |
231 |
cctacattaataacaacttaaaaattagcatcacgatacttgtt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48794334 |
cctacattaataacaacttaaaaattagcatcacgatacatgtt |
48794291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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