View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_37 (Length: 275)
Name: NF11092_high_37
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 17392253 - 17392009
Alignment:
| Q |
19 |
ataaactgctttgaacggcacattgaacaaactgatacaagccaatatcaacttggacaagtgtttaaagtaccctccctctagaacaccggcattagca |
118 |
Q |
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| T |
17392253 |
ataaactgctttgaacggcacattgaacaaactgatacaagccaatatcaacttggacaagtgtttaaagtaccctccctctggaacaccggcattagca |
17392154 |
T |
|
| Q |
119 |
tttacacgatctatagccaaatattccaatttgggacaccctaaaagaagtttcgtgaaatcctttgtatcttcgnnnnnnntgttaaacataaacaacg |
218 |
Q |
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| T |
17392153 |
tttacacgatctatagccaaatattccaatttgggacaccctaaaagaagtttcgtgaaatcctttgtatcttcgaaaaaaatgttaaacacaaacaacg |
17392054 |
T |
|
| Q |
219 |
tttcgagcaaaggaagatcaacggaacagtgaaccatagagccta |
263 |
Q |
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| T |
17392053 |
tttcgagcaaaggaagatcaacggaacagtgaaccatagagccta |
17392009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 17383329 - 17383202
Alignment:
| Q |
136 |
caaatattccaatttgggacaccctaaaagaagtttcgtgaaatcctttgtatcttcgnnnnnnntgttaaacataaacaacgtttcgagcaaaggaaga |
235 |
Q |
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| T |
17383329 |
caaatattccaattttggacacccgaaaagaagtttcatgaaatcctcagtatctttgaaagaaatttgagacataatcaaggtttcgagcaaaggaaga |
17383230 |
T |
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| Q |
236 |
tcaacggaacagtgaaccatagagccta |
263 |
Q |
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| T |
17383229 |
tcaacggaacagtgaagcatagagccta |
17383202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 17376953 - 17376826
Alignment:
| Q |
136 |
caaatattccaatttgggacaccctaaaagaagtttcgtgaaatcctttgtatcttcgnnnnnnntgttaaacataaacaacgtttcgagcaaaggaaga |
235 |
Q |
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||||||||||||||| |||||||| |||| ||||||| ||||||||| |||||||| | | | ||| | ||||| || ||| ||||||||| |
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| T |
17376953 |
caaatattccaattttggacacccgaaaaaaagtttcatgaaatcctccttatcttcgaaaaaaatttgattcatgatcaacgatttgaggaaaggaaga |
17376854 |
T |
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| Q |
236 |
tcaacggaacagtgaaccatagagccta |
263 |
Q |
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| T |
17376853 |
tcaacggaacagtgaagcatagagccta |
17376826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 17383467 - 17383372
Alignment:
| Q |
19 |
ataaactgctttgaacggcacattgaacaaactgatacaagccaatatcaacttggacaagtgtttaaagtaccctccctctagaacaccggcatt |
114 |
Q |
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| T |
17383467 |
ataaactgctgtgaacgggacattaaataaagagatacgagcccgagtcaatttggataagtgtttaaagtaccctccatctggaacaccggcatt |
17383372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 17377044 - 17376996
Alignment:
| Q |
66 |
tcaacttggacaagtgtttaaagtaccctccctctagaacaccggcatt |
114 |
Q |
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| T |
17377044 |
tcaacttggataagtgtttaaagtagcctcccactggaacaccggcatt |
17376996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 20111469 - 20111417
Alignment:
| Q |
65 |
atcaacttggacaagtgtttaaagtaccctccctctagaacaccggcattagc |
117 |
Q |
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| T |
20111469 |
atcaagttggacaagggtttaaagtaccctctttctgtaacaccggcattagc |
20111417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 26053606 - 26053850
Alignment:
| Q |
19 |
ataaactgctttgaacggcacattgaacaaactgatacaagccaatatcaacttggacaagtgtttaaagtaccctccctctagaacaccggcattagca |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
26053606 |
ataaactgctttgaacggcacattgaacaattcgatacaagccgatttcaactttgacaagtgtttaaagtaccctccctctggaacaccgacgttagca |
26053705 |
T |
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| Q |
119 |
tttacacgatctatagccaaatattccaatttgggacaccctaaaagaagtttcgtgaaatcctttgtatcttcgnnnnnnntgttaaacataaacaacg |
218 |
Q |
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|||||||||| ||||| |||| ||| ||||||||||||||| |||||||||||| |||||||||||||||| ||| ||| ||||| ||| |||| |
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| T |
26053706 |
tttacacgatatatagtcaaagatttcaatttgggacacccaaaaagaagtttcatgaaatcctttgtatcatcgaaaaaaatgtgaaacagaaataacg |
26053805 |
T |
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| Q |
219 |
tttcgagcaaaggaagatcaacggaacagtgaaccatagagccta |
263 |
Q |
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| T |
26053806 |
tttcgagcaaaggaagatcaacggaacagtgaagcatagagccta |
26053850 |
T |
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