View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_45 (Length: 250)
Name: NF11092_high_45
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44287458 - 44287216
Alignment:
| Q |
1 |
tagaacagaagtaacaaacgattaaagaaacaaatgtaaaagacaatgaacatgatcgatctattatatgttctcgcagtttgatcaatgatgtctacct |
100 |
Q |
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| T |
44287458 |
tagaacagaagtaacaaacgattaaagaaacaaatgtaaaagacaatgaacatgatcgatctattatatgttctcgcagtttgatcaatggtgtctacct |
44287359 |
T |
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| Q |
101 |
ttacgactatagtattgttttatttcaattattgatgcttgaacttgtcactaatgactggtttgatcaacatatcatttgttttctctaaattatgaac |
200 |
Q |
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| T |
44287358 |
ttacgactatagtattgttttatatcagttatggatgcttgaacttgtcaccaatgactgatttgatcaacatatcatttgttttctctgaattatgaac |
44287259 |
T |
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| Q |
201 |
attttcaaa-tagtatctatccaaatacaagtaactctctgct |
242 |
Q |
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| T |
44287258 |
attttcaaagtagtatctatccaaatacaagtaactctctgct |
44287216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 9726349 - 9726436
Alignment:
| Q |
135 |
atgcttgaacttgtcactaatgactggtttgatcaacatatcatttgttttctctaaattatgaacattttcaaatagtatctatcca |
222 |
Q |
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| T |
9726349 |
atgcttgaacttgtcactgatgactgacttggtcaacatatcagttgcattctctaaaatattaacattttcaagtaatatccatcca |
9726436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 10683235 - 10683134
Alignment:
| Q |
136 |
tgcttgaacttgtcactaatgactggtttgatcaacatatcatttgttttctctaaattatgaacattttcaaatagtatctatccaaatacaagtaact |
235 |
Q |
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||||||||||||||||| |||||| | ||| ||||||||| || |||||||||| ||||||||||| ||| || ||| | | || || ||||||||| |
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| T |
10683235 |
tgcttgaacttgtcactgatgactagcttggtcaacatatttgctgatttctctaaagtatgaacatttccaagtattatatgttcagatgcaagtaact |
10683136 |
T |
|
| Q |
236 |
ct |
237 |
Q |
| |
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|| |
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| T |
10683135 |
ct |
10683134 |
T |
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