View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11092_high_46 (Length: 249)
Name: NF11092_high_46
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_46 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5078535 - 5078400
Alignment:
| Q |
1 |
aaccctttcttccttcattttcaacgatgaatctcagtaacttcaagtttctcggtnnnnnnntgacaatggtaataac-gaaaaacataatgcaagttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
5078535 |
aaccctttcttccttcattttcaacgatgaatctcagtaacttcaagtttctcggtaaaaaaatgacaatgacaataacaaaaaaacataatgcaagttt |
5078436 |
T |
|
| Q |
100 |
caattcctccattggctcctcactcatgtcatccac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5078435 |
caattcctccattggctcctcactcatgtcatccac |
5078400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 5084539 - 5084467
Alignment:
| Q |
64 |
tgacaatggtaataacgaaaaa-cataatgcaagtttcaattcctccattggctcctcactcatgtcatccac |
135 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5084539 |
tgacaatggcaataacaaaaaaacataatgcaagtctcaattcctccattggctcctcactcatgtcatccac |
5084467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 5081466 - 5081413
Alignment:
| Q |
141 |
aacttgcatgtagattctgaagagctctccctcacaactaaagttcttcgtgga |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081466 |
aacttgcatgcagattctgaagagctctccctcacaactaaagttcttcgtgga |
5081413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 5078159 - 5078105
Alignment:
| Q |
141 |
aacttgcatgtagattctgaagagctctccctcacaactaaagttcttcgtggag |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5078159 |
aacttgcatgtagattatgaagagctctccctcagaactaaagttcttcgtggag |
5078105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 5081389 - 5081352
Alignment:
| Q |
197 |
tgcaacagcaggaaaacacctcctcaccatcaataatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081389 |
tgcaacagcaggaaaacacctcctcaccatcaataatt |
5081352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 5078084 - 5078045
Alignment:
| Q |
195 |
gctgcaacagcaggaaaacacctcctcaccatcaataatt |
234 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5078084 |
gctgcaatagcaggaaaacacttcctcaccatcaataatt |
5078045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University