View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_high_5 (Length: 479)

Name: NF11092_high_5
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_high_5
NF11092_high_5
[»] chr3 (7 HSPs)
chr3 (136-408)||(13335568-13335840)
chr3 (214-408)||(13173692-13173886)
chr3 (214-408)||(13163644-13163838)
chr3 (412-477)||(8585615-8585680)
chr3 (176-292)||(12131027-12131143)
chr3 (214-408)||(13346765-13346965)
chr3 (206-266)||(10955531-10955591)
[»] scaffold0002 (2 HSPs)
scaffold0002 (214-408)||(133102-133296)
scaffold0002 (214-408)||(143150-143344)
[»] chr6 (1 HSPs)
chr6 (179-404)||(31676978-31677201)
[»] chr1 (1 HSPs)
chr1 (159-271)||(828673-828785)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 136 - 408
Target Start/End: Complemental strand, 13335840 - 13335568
Alignment:
Q  136 aagtgtttcaagagaagaaaggtgttgaagtccaattccgtcaaatgatttcattttcgagagatgagtgattgtgagagacacaagggaaataggcagc 235  Q
    ||||||||||||||| || |||||| | |||||| |||| ||||  ||||| ||||   |||||| ||  ||  | | ||||||||| ||||| ||||||    
T  13335840 aagtgtttcaagagaggataggtgtcggagtccatttccatcaatggattttatttcacagagattagaaatactcaaagacacaagtgaaattggcagc 13335741  T
Q  236 aacctctccttcaacaaggtgtcaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggagaccccaattagttacaggtg 335  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||  |||  ||||||||||| | |  |||||||||||||| | || |||||| |    
T  13335740 aaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagagaagtaagatgttggagaccccattcagctacaggcg 13335641  T
Q  336 ttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa 408  Q
    ||| ||||| |||||||  |||| ||||   ||||| ||| ||||||||||| ||||||| ||||||||||||    
T  13335640 ttgctattctcactgatcgaataaaaatgcttcgtaatttgggaggtaggcaagctcctttacaaaatggtaa 13335568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 408
Target Start/End: Complemental strand, 13173886 - 13173692
Alignment:
Q  214 agacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttgg 313  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||||||| |||||| |||  |||  ||||||||||| | |  ||||||    
T  13173886 agacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttgg 13173787  T
Q  314 agaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa 408  Q
    |||||||| | || |||||| |||| ||||| ||||||| ||||||||||   ||||| ||| ||||||||||| | ||||| ||||||||||||    
T  13173786 agaccccattcagctacaggcgttgctattctcactgattcaatataaatacttcgtattttgggaggtaggcaagttcctttacaaaatggtaa 13173692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 408
Target Start/End: Complemental strand, 13163838 - 13163644
Alignment:
Q  214 agacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttgg 313  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||  |||  ||||||| ||| | |  ||||||    
T  13163838 agacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagcgaagtaagatgttgg 13163739  T
Q  314 agaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa 408  Q
    |||||||| | || |||||| |||| ||||| |||||    ||||| |||   ||||| ||| ||||||||||| ||||||| ||||||||||||    
T  13163738 agaccccattcagctacaggcgttgctattctcactgtattaatatcaatacttcgtaatttgggaggtaggcaagctcctttacaaaatggtaa 13163644  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 412 - 477
Target Start/End: Original strand, 8585615 - 8585680
Alignment:
Q  412 atgttcttctgaaagatcataaagagataaatgttcaagagcagtgagggtgtccatctgttgagg 477  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8585615 atgttcttcggaaagatcataaagagataaatgttcaagagcagtgagggtgtccatctgttgagg 8585680  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 12131143 - 12131027
Alignment:
Q  176 tcaaatgatttcattttcgagagatgagtgattgtgagagacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcac 275  Q
    ||||||||||||||||  ||||||| |   ||||||||||| || ||||| || |||||||||  ||||||||||||||||| |||||||||||||||||    
T  12131143 tcaaatgatttcatttcagagagataacaaattgtgagagagactagggagatgggcagcaactgctccttcaacaaggtgttaacaatatcatcgtcac 12131044  T
Q  276 ctccaatactcaatttt 292  Q
    |||||||| ||||||||    
T  12131043 ctccaatagtcaatttt 12131027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 408
Target Start/End: Complemental strand, 13346965 - 13346765
Alignment:
Q  214 agacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatc------atcgtcacctccaatactcaattttgaaagagaattcatg 307  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||      ||||| ||||||||||  |||| ||||||||||| | |      
T  13346965 agacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgacatcgttacctccaatatacaatcttgaaagagaagtaaga 13346866  T
Q  308 tgttggagaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggta 407  Q
    ||||||||||||||   |  |||||| |||| ||||| |||||||  ||||| |||   ||||| ||| ||||||||||| ||||||| ||||||| |||    
T  13346865 tgttggagaccccatccatctacaggcgttgctattctcactgatttaatattaatacttcgtaatttgggaggtaggcaagctcctttacaaaattgta 13346766  T
Q  408 a 408  Q
    |    
T  13346765 a 13346765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 10955531 - 10955591
Alignment:
Q  206 attgtgagagacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatat 266  Q
    ||||| |||||||||||| |||| |||||||||  ||| ||||| ||||||| ||||||||    
T  10955531 attgtcagagacacaaggaaaatgggcagcaactgctctttcaataaggtgtgaacaatat 10955591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 408
Target Start/End: Original strand, 133102 - 133296
Alignment:
Q  214 agacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttgg 313  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||||||| |||||| |||  |||  ||||||||||| | |  ||||||    
T  133102 agacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttgg 133201  T
Q  314 agaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa 408  Q
    |||||||| | || |||||| |||| ||||| ||||||| ||||||||||   ||||| ||| ||||||||||| | ||||| ||||||||||||    
T  133202 agaccccattcagctacaggcgttgctattctcactgattcaatataaatacttcgtattttgggaggtaggcaagttcctttacaaaatggtaa 133296  T

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Target: scaffold0002; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 408
Target Start/End: Original strand, 143150 - 143344
Alignment:
Q  214 agacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttgg 313  Q
    ||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||  |||  ||||||| ||| | |  ||||||    
T  143150 agacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagcgaagtaagatgttgg 143249  T
Q  314 agaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttggaggtaggcaggctccttcacaaaatggtaa 408  Q
    |||||||| | || |||||| |||| ||||| |||||    ||||| |||   ||||| ||| ||||||||||| ||||||| ||||||||||||    
T  143250 agaccccattcagctacaggcgttgctattctcactgtattaatatcaatacttcgtaatttgggaggtaggcaagctcctttacaaaatggtaa 143344  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 404
Target Start/End: Original strand, 31676978 - 31677201
Alignment:
Q  179 aatgatttcattttcgagagatgagtgattgtgagagacacaagggaaataggcagcaacctctccttcaacaaggtgtcaacaatatcatcgtcacctc 278  Q
    |||||||||||||  ||||||| ||||||||| |||||||| | |||||||||||| ||| |||||||||| || |||| |||||| |||    ||||||    
T  31676978 aatgatttcatttcagagagattagtgattgtcagagacactaaggaaataggcagtaacttctccttcaagaaagtgttaacaatgtca---ccacctc 31677074  T
Q  279 caatactcaattttgaaagagaattcatgtg-ttggagaccccaattagttacaggtgttgatattcccactgatacaatataaattgatcgtagttttg 377  Q
    |||||   || |  ||||||| | | | | | |||||||||||| ||| ||||||| |||| ||||| ||| ||| |||||| || ||||| || ||| |    
T  31677075 caatatctaaatccgaaagagtagttaggcgtttggagaccccatttaattacaggcgttgttattctcacggattcaatatgaaatgatcttaatttgg 31677174  T
Q  378 gaggtaggcaggctccttcacaaaatg 404  Q
    |||||||||| |||||||||| |||||    
T  31677175 gaggtaggcaagctccttcaccaaatg 31677201  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 828785 - 828673
Alignment:
Q  159 gttgaagtccaattccgtcaaatgatttcattttcgagagatgagtgattgtgagagacacaagggaaataggcagcaacctctccttcaacaaggtgtc 258  Q
    |||||||| || |||| ||||| ||||||||||  ||||||| | | ||||| |||||||| ||| |||| || |||||| ||||||||||||||||||     
T  828785 gttgaagttcatttccttcaaaggatttcatttcagagagattacttattgtcagagacacgaggaaaatgggaagcaacttctccttcaacaaggtgtt 828686  T
Q  259 aacaatatcatcg 271  Q
    |||  ||||||||    
T  828685 aacgttatcatcg 828673  T

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