View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_high_6 (Length: 449)
Name: NF11092_high_6
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 74 - 445
Target Start/End: Original strand, 43143494 - 43143865
Alignment:
| Q |
74 |
gaaacaaagtgtgacaatgaagcatagttagctatttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattatt |
173 |
Q |
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| T |
43143494 |
gaaacaaagtgtgacaatgaagcatagttagctatttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattatt |
43143593 |
T |
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| Q |
174 |
aaaaagggttttattatatagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgcc |
273 |
Q |
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| T |
43143594 |
aaaaagggttttattgtacagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgcc |
43143693 |
T |
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| Q |
274 |
ttttcttagttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtc |
373 |
Q |
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| T |
43143694 |
ttttcttagttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtc |
43143793 |
T |
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| Q |
374 |
tcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatctctgcttctc |
445 |
Q |
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| T |
43143794 |
tcgggacttaaagatggtggatattttgatgatatgactcttgcagccatagctggtacatctttggttctc |
43143865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 181 - 436
Target Start/End: Original strand, 43155707 - 43155962
Alignment:
| Q |
181 |
gttttattatatagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttctt |
280 |
Q |
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| T |
43155707 |
gttttattatacagccctgttcgatgggctttgccactggtggaagaacattctttctttggggaggctgtatgatggcaagtagcttttgccttttctt |
43155806 |
T |
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| Q |
281 |
agttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
380 |
Q |
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| T |
43155807 |
agttgtcgctttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
43155906 |
T |
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| Q |
381 |
ttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatct |
436 |
Q |
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| T |
43155907 |
ttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatct |
43155962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43143421 - 43143467
Alignment:
| Q |
1 |
ttctttttattcaccaatctctgtagcaacatatgagtttgagatag |
47 |
Q |
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| T |
43143421 |
ttctttttattctccaatctctgtagcaacatatgagtttgagatag |
43143467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 43155486 - 43155557
Alignment:
| Q |
109 |
ttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattattaaaaagg |
180 |
Q |
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| T |
43155486 |
ttgaattaagttgcagtattaattagataactttttatttagacttttgatagtgtatcattatttaaaagg |
43155557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 321 - 430
Target Start/End: Complemental strand, 33833754 - 33833645
Alignment:
| Q |
321 |
tttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagc |
420 |
Q |
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| T |
33833754 |
tttttctaaagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcaaaatggtggatattctgatgatatgactcttgcagc |
33833655 |
T |
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| Q |
421 |
catagctggt |
430 |
Q |
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|||||||||| |
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| T |
33833654 |
catagctggt |
33833645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 33833886 - 33833817
Alignment:
| Q |
193 |
agccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaag |
262 |
Q |
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|||||||||| || || |||| |||| |||||| ||| |||||| |||||||||| || ||||||||||| |
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| T |
33833886 |
agccttgttcaataggatttgccactggtggaaaaaccttctttttgtggggaggttgcatgatggcaag |
33833817 |
T |
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